Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00055 ATGCCAGTCATCGCTGCAAAACGCTCGTTGCGATCTCACCCTTCCTCGCCTCCCCGTAAATCGCCCCGCCGATGCACCGCTGCAACTCCCAATTCCTCCCCCAATGTAAACAAATTCGGCACCGATGAAAACCAAGCTCATCCGGCAGCTGTGAAACCGAAGTGGAATCCCAAAGATGGTGAGCAAATGAAGGCGGCGAAGCTAGCATTGCACTTGTCCACTGCGCCGGCTTCGGTTGTGTGCCGTGAGGAGGAGCAGAATGTTGTTTTAGAATTCTGCAAAGGGTGCGTTGAGCACAAAAAGGCCGGGAGTCTGTACATATGCGGGTGTCCCGGAACCGGAAAATCGTTATCTATGGAGAAAGTGAAAGAGCAATTACTCAATTGGGCTAAGGAGGCAGGTCTCCCGCTGCCAGATGTTTTATCTGTAAACTGTACAACTCTAGCTAACACATCGGATATCTTCACAAAGATGCTTGGGTCAAACCAAACACAGGGTAAAAAGGTTTCAGCCACGCCCTTACAGCAACTTCAGAACATGTATTCTCAGAAATCACCTATCAAGAACATGACATTGATTGTAGCTGACGAATTAGATTATTTGATAACCAAAGACAGAGCCGTGCTTCATGATCTTTTCATGCTCACCACCTTCCCTTTTTCTAGATGTATATTAATAGGTGTAGCGAATGCCATTGACTTAGCTGATCGATTTCTTCCAAGGCTTACATCATTAAATTGCAAGCCTGCTGTTGTAAATTTCCAGGCTTACTCGAAAGATCAGATCCTCAAGATTCTTGAAGAAAGGTTAAATGAACTTCCTTACACCGTCTTTCAACAGCAAGCCCTGGAACTATGTGCTAGAAAAGTTGCTGCAGCTTCTGGAGACATGCGCAATGCCCTTTCTATATGCAGGAGTGCAATTGAGATGCTTGAAGCAGAAGTTAGAGAATCTGCCTGCAATATGAATACTTCATTGGAAGAGATATCATTCTCTACGCAGAATGTTCCTACAGCTCCTGATCTTATGAAAAAACGGGAATTTGATACTGTAAGGACTGATCACATGGCTCGAGCCTTGTCCAAGACTTATAGATCACCGGTGGTGGATACAATACAATCTCTGCCACATCATCAGCAGATTATACTCTGCTCTTCTCTGGCTCATTTTCGTGGAGCCAAGAAAGATACAATCCTCGGAGAGTTGTATAAATCGTATGTGGGGACGTGCAGATCATCTTTAATTCCTCCAACAGGAATCTTAGAATTTTCGAACATGTGTAGAGTGCTAAATGACCAGGGTCTTATTAAACTTGGACAATCTCGAGAGGATAAATTGAGAAGAGTGTCGCCTAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGGAATACGATAA 1401 0.4433 MPVIAAKRSLRSHPSSPPRKSPRRCTAATPNSSPNVNKFGTDENQAHPAAVKPKWNPKDGEQMKAAKLALHLSTAPASVVCREEEQNVVLEFCKGCVEHKKAGSLYICGCPGTGKSLSMEKVKEQLLNWAKEAGLPLPDVLSVNCTTLANTSDIFTKMLGSNQTQGKKVSATPLQQLQNMYSQKSPIKNMTLIVADELDYLITKDRAVLHDLFMLTTFPFSRCILIGVANAIDLADRFLPRLTSLNCKPAVVNFQAYSKDQILKILEERLNELPYTVFQQQALELCARKVAAASGDMRNALSICRSAIEMLEAEVRESACNMNTSLEEISFSTQNVPTAPDLMKKREFDTVRTDHMARALSKTYRSPVVDTIQSLPHHQQIILCSSLAHFRGAKKDTILGELYKSYVGTCRSSLIPPTGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKVDEGDITFALQGIR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00055 466 PIRSF Cdc6 5 466 IPR016314 GO:0006270|GO:0051301
Spst6g00055 466 Pfam AAA domain 100 217 IPR003593 GO:0016887
Spst6g00055 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 318 IPR027417 -
Spst6g00055 466 Gene3D - 372 455 IPR036388 -
Spst6g00055 466 CDD Cdc6_C 376 458 IPR015163 -
Spst6g00055 466 FunFam Cell division control protein 375 465 - -
Spst6g00055 466 FunFam Cell division control protein 246 372 - -
Spst6g00055 466 CDD AAA 85 243 - -
Spst6g00055 466 Gene3D - 59 247 IPR027417 -
Spst6g00055 466 SMART Cdc6_C_2 383 462 IPR015163 -
Spst6g00055 466 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 21 465 - -
Spst6g00055 466 Gene3D - 248 371 - -
Spst6g00055 466 FunFam Cell division control protein 60 245 - -
Spst6g00055 466 Pfam AAA lid domain 267 313 IPR041083 -
Spst6g00055 466 MobiDBLite consensus disorder prediction 1 57 - -
Spst6g00055 466 Pfam CDC6, C terminal winged helix domain 383 461 IPR015163 -
Spst6g00055 466 SUPERFAMILY "Winged helix" DNA-binding domain 368 464 IPR036390 -
Spst6g00055 466 MobiDBLite consensus disorder prediction 25 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00055 20 466 Core DNA Replication Machinery Family AT2G29680 60.965 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00055 K02213 - gmx:100791200 832.402