Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00051 ATGATGTCGTACTCACGGAGATCAAGGTATTCTCCATCTCTTTCTCCTTCTCCTTCTCCTTCTCCATACAAGCGATGTGGTCGGTCTGTGTCCAGGTCGCTCTCGGCGTCAATATCCATAAGCCGTTCAAGGAGTGTATCAAGAGATGCAGAAAATCCAGGGAACAATCTGTATGTGACAGGTTTGTCTCCTAGGATCACCAAGAGGGAACTGGAGAAGCATTTTGCTGCAGAGGGAAAGGTGATAGATGTACATCTGGTGGTTGATCCTTGGACAAGGGAATCACGTGGGTTTGGTTTTGTGACAATGGAAACAGTTGAGGAGGCTGATCGATGTGTAAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTCATCACAGTGGAGAAGGCCAGAAGGCGACGTGGTCGAACCCCAACACCAGGGAAATATCTAGGGCTGAGAACTATTCGTGGGCGACGCAGGTCTCCTAGTTACTCTCCTCGTCGCTCCCCTAGCTATTCTCCTTACAGAAGAAGTTATAGTCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCCCCTCACTTTGGGCGGAGGCGGTCATACTCTCCTCCGTCTTACTCCCGGAGAAGGTCTTATTCTCCATTCTACAGCCGATACAGGTCTTATGTGAGATATGATCGACACAGGTCATATTCGCGCTCTCGTTCTCCTTATAGCAGGTCTCCTGTCAGCTTGCGCGACAGATCATACTCTCCCTATGACTCCCGATATGACTTGCCGTATGGTCGCTCCTATAGAAGGAACCGTTACAGGTCTGTTTCCCGGAGTGCCTCACCTGATGATCGCTATTTCGGAAGGCATCGTTACAGGTCTGTTTCTCACAGTGCCTCACCTAGGCCAAGGAGGAGGTCAAGGAGGAGCTACTCACGTAGTGCCACTCCTGTATCAAAGAGGAGAGACTCTCGAAGTTTGTCCCCCAGGTCCAGGAGGAGTCATTCAAGAAGCTCCAAGAGGAGCGGCAAATATTCTAAACACCAGGCAAGATGCTCGAGTGTGAGTGCAAGTTCGAGATCCCTATCGAGGTCTAATACTCCAAGATCTACCTCTCCTTCGACTTGA 1113 0.4987 MMSYSRRSRYSPSLSPSPSPSPYKRCGRSVSRSLSASISISRSRSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEEADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPHFGRRRSYSPPSYSRRRSYSPFYSRYRSYVRYDRHRSYSRSRSPYSRSPVSLRDRSYSPYDSRYDLPYGRSYRRNRYRSVSRSASPDDRYFGRHRYRSVSHSASPRPRRRSRRSYSRSATPVSKRRDSRSLSPRSRRSHSRSSKRSGKYSKHQARCSSVSASSRSLSRSNTPRSTSPST 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00051 370 MobiDBLite consensus disorder prediction 290 306 - -
Spst6g00051 370 MobiDBLite consensus disorder prediction 226 370 - -
Spst6g00051 370 MobiDBLite consensus disorder prediction 271 286 - -
Spst6g00051 370 FunFam Serine/arginine-rich splicing factor SR45a 3 139 - -
Spst6g00051 370 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 49 266 - -
Spst6g00051 370 Gene3D - 14 139 IPR012677 -
Spst6g00051 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Spst6g00051 370 MobiDBLite consensus disorder prediction 159 187 - -
Spst6g00051 370 SUPERFAMILY RNA-binding domain, RBD 43 158 IPR035979 GO:0003676
Spst6g00051 370 CDD RRM_SF 57 129 - -
Spst6g00051 370 MobiDBLite consensus disorder prediction 131 208 - -
Spst6g00051 370 MobiDBLite consensus disorder prediction 321 342 - -
Spst6g00051 370 MobiDBLite consensus disorder prediction 343 370 - -
Spst6g00051 370 SMART rrm1_1 56 129 IPR000504 GO:0003723
Spst6g00051 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Spst6g00051 370 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00051 Spst-Chr6 731090 734126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00051 56 137 Eukaryotic Initiation Factors Gene Family AT2G36660 34.146 3.67e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00051 - - gmx:100808038 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00051 6 731090 734126 Spst6g00051 6 731090 734126 ECH