Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00030 ATGGAATCACGAAAAGTAGTGTGTAGTTGGCTGTCTGGCACTGACCGACACTATCATTTGAGAGGTGTTGTGTTTCAAGTACTTGGCAACTTTAAAGTTTTGTCTAGTGAACACAAAATGAACGAATCCCAGTTTTGTAACTGTTATCTGGTTAAGAAGGGATCTGTAGACATGCAGTCCAAGTCTGGAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCGGCCTAGCAGTGGTTATTCCGATCCTTGGTGGCGTGGTATTGGTTACAACCCCTTGGCCCAAACAATGGCTGGGGCAAATGCGTCCAATTCTTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAAGGCCAATCTTTGTCGAATAGTGGAATGAATGAGGAAGATGATGATACCACTAAAGATTCGCAGCCTGCTGCTCCTAACGAATCAGGAAATTACGGGCATGAACAGCAAGGGATGCAGCATACTGCGTCATCTGCACCGTCCATGCGTGAAGAATGCCTTACTCAGACACCCCAGCTGGAGCTTGTTGGTCATTCAATTGCATGTGCTACAAATCCATATCAAGATCCGTATTATGGTGGCATGATGGCAGCTTATGGTCACCAGCAGATGGGATATGCTCCTTTTATAGGAGGAATGCATCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTTAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAAGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAGTCTCGGCACCAGCATGCTATGAGAAGGGCAAGGGGTAGCGGAGGACGATTTGCCAAGAAATCTGACGCGGAAGGCTCAAACAACTCAGCCAAGGAAAAGGATAATGGTACTGATTCTGTCCTTTCATCACAGTCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCAAACATGCAACAAGATGCAAGAGCAGCAAAAGTGCACAACAGGTTCGAAGCACCCCGTTACCAAAATGGCAGTGGCTCTTACCACAACCATAATGGTTTACAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCACGTCAGCAACTAAACCATAATTGA 1191 0.4542 MESRKVVCSWLSGTDRHYHLRGVVFQVLGNFKVLSSEHKMNESQFCNCYLVKKGSVDMQSKSGTANRLRSDPHSFRPSSGYSDPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDTTKDSQPAAPNESGNYGHEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQMGYAPFIGGMHHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGSGGRFAKKSDAEGSNNSAKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVHNRFEAPRYQNGSGSYHNHNGLQSSVYHSSSGERVEEGDCSRQQLNHN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00030 396 MobiDBLite consensus disorder prediction 304 343 - -
Spst6g00030 396 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 234 289 IPR001289 GO:0003700|GO:0006355
Spst6g00030 396 MobiDBLite consensus disorder prediction 101 174 - -
Spst6g00030 396 Gene3D - 232 294 - -
Spst6g00030 396 MobiDBLite consensus disorder prediction 380 396 - -
Spst6g00030 396 ProSiteProfiles NF-YA/HAP2 family profile. 232 292 IPR001289 GO:0003700|GO:0006355
Spst6g00030 396 ProSitePatterns NF-YA/HAP2 subunit signature. 237 257 IPR018362 GO:0003677|GO:0016602
Spst6g00030 396 PRINTS CCAAT-binding transcription factor subunit B signature 235 257 IPR001289 GO:0003700|GO:0006355
Spst6g00030 396 PRINTS CCAAT-binding transcription factor subunit B signature 266 289 IPR001289 GO:0003700|GO:0006355
Spst6g00030 396 MobiDBLite consensus disorder prediction 356 379 - -
Spst6g00030 396 MobiDBLite consensus disorder prediction 142 174 - -
Spst6g00030 396 MobiDBLite consensus disorder prediction 101 131 - -
Spst6g00030 396 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 80 346 IPR001289 GO:0003700|GO:0006355
Spst6g00030 396 MobiDBLite consensus disorder prediction 265 396 - -
Spst6g00030 396 MobiDBLite consensus disorder prediction 267 286 - -
Spst6g00030 396 SMART cbf3 231 292 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00030 Spst-Chr6 565048 568698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00030 58 336 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.128 4.45e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst6g00030 CBFB_NFYA 6.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00030 K08064 - gmx:100808378 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00030 6 565048 568698 Spst6g00030 6 565048 568698 ECH
Spst6g00030 6 565048 568698 Spst8g01020 8 8833010 8839293 PCT