Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00016 ATGACGCCGACGCTCAATCTTGCAGCCGTAGGTTTTCCGCTCCGTTTCTCTTCCTCTGCAGCCTCTACCCACCGGACCTCCGTCCGCGCCGTCGCGGCGCAAGACGTTCAGACGCGGCTGCCGGCCGCGAGCCTCTACGAGGTGCTACGAGTCGAGCCCGACGCGTCCCCGACGGAGATCAAGTCGGCGTACAGGAGCCTCGCGAAGCTCTACCATCCTGATGCTGTGGTGCGGCGTTCGCCGGACATCAGTGGTGCCGGCGAAGTGGGCGACGGAGACTTTATTCAGATCCGAAGCGCGTACGAGACGCTGTCGGATCCCTCGGCGAGGGCTATGTACGATCTGACGCTGACGGCGGCGCACGGCGGAAGAAACCGCCGGTTTCCGATTCCGCTAAGTCGGAACCATTCGTCCACGTTCTACGCGACGCGAAGATGGGAAACGGACCAATGCTGGTAG 459 0.6318 MTPTLNLAAVGFPLRFSSSAASTHRTSVRAVAAQDVQTRLPAASLYEVLRVEPDASPTEIKSAYRSLAKLYHPDAVVRRSPDISGAGEVGDGDFIQIRSAYETLSDPSARAMYDLTLTAAHGGRNRRFPIPLSRNHSSTFYATRRWETDQCW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00016 152 SUPERFAMILY Chaperone J-domain 39 125 IPR036869 -
Spst6g00016 152 CDD DnaJ 46 106 IPR001623 -
Spst6g00016 152 ProSiteProfiles dnaJ domain profile. 44 117 IPR001623 -
Spst6g00016 152 SMART dnaj_3 43 109 IPR001623 -
Spst6g00016 152 Pfam DnaJ domain 45 114 IPR001623 -
Spst6g00016 152 ProSitePatterns Nt-dnaJ domain signature. 94 113 IPR018253 -
Spst6g00016 152 Gene3D DnaJ domain 29 128 IPR036869 -
Spst6g00016 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 14 152 - -
Spst6g00016 152 PRINTS DnaJ domain signature 89 109 IPR001623 -
Spst6g00016 152 PRINTS DnaJ domain signature 46 64 IPR001623 -
Spst6g00016 152 PRINTS DnaJ domain signature 64 79 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00016 Spst-Chr6 460162 460620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00016 46 114 C2H2 Transcription Factor Family AT1G74250 42.857 8.72e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00016 - - var:108320973 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00016 6 460162 460620 Spst6g00016 6 460162 460620 ECH
Spst6g00016 6 460162 460620 Spst8g01012 8 8787743 8788318 PCT