Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00005 ATGGGTGTCCCGCAGAATCTCAATCTGCCTTTGTCAATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCTAATGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCGACAACCTCGGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATTATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCCTTTTACAATAACTTTTCCGAGGAGGATCTTACACGAGTTCAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTTCTGGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCGAAGTATGATTTTAAGACATACAAGAGTGATGTGTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGCATCCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGACACCAATGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAACCAGCTTTTGATGACTTTATACTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTTCAACATATTCGCACTAAGCTAGGTCAGCATGACCTGTGTAAAATATATCCGAATTTATATGTTATTCAATCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAAACAACAAAGCATGATTTTGTATTTTACTCTGATCGTCTGATTCGATTGGTTGTAGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAGTCACTCCCACTGGTTCTGTATACACTGGTGTTGATTTTTGCAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTAATTCACAGAGAAGGTGACAATGGTCAACAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGACAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGCAATTCGGCTGTTGAAGCAATTTCTTTACTCATAAGAAAAGGTGTACCTGAATCCAACATTATATTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTTGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAGATCGGTTTGAATGAAGATTTCCGTGTCATACCAGGCATGGGAGAGTTCGGAGATAGGTACTTTGGAACAGATGATGATGATGTGCAAATGGTGGTTTCTTCACAGTAG 1467 0.3974 MGVPQNLNLPLSMDAKSAVELMESSNEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYNNFSEEDLTRVQDYNFDHPDAFDTEQLLLVMDKLKHGEAVDIPKYDFKTYKSDVLRRVNPSDVIILEGILVFHDPRIRELMNMKIFVDTDADVRLARRIRRDTNEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVEAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDVQMVVSSQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00005 488 Pfam Phosphoribulokinase / Uridine kinase family 61 245 IPR006083 GO:0005524|GO:0016301
Spst6g00005 488 Gene3D - 261 476 IPR029057 -
Spst6g00005 488 FunFam Uridine kinase 261 476 - -
Spst6g00005 488 PRINTS Uridine kinase signature 203 214 - -
Spst6g00005 488 PRINTS Uridine kinase signature 59 76 - -
Spst6g00005 488 PRINTS Uridine kinase signature 134 149 - -
Spst6g00005 488 PRINTS Uridine kinase signature 225 238 - -
Spst6g00005 488 PRINTS Uridine kinase signature 189 199 - -
Spst6g00005 488 PRINTS Uridine kinase signature 89 100 - -
Spst6g00005 488 CDD UMPK 61 257 IPR000764 -
Spst6g00005 488 Gene3D - 55 260 IPR027417 -
Spst6g00005 488 PANTHER URIDINE KINASE 44 386 - -
Spst6g00005 488 NCBIfam uridine kinase 57 257 IPR000764 -
Spst6g00005 488 SUPERFAMILY PRTase-like 260 477 IPR029057 -
Spst6g00005 488 CDD PRTases_typeI 334 449 IPR000836 -
Spst6g00005 488 FunFam Uridine kinase 56 260 - -
Spst6g00005 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 250 IPR027417 -
Spst6g00005 488 Pfam Uracil phosphoribosyltransferase 275 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00005 Spst-Chr6 329943 340957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00005 13 479 PRT Gene Family AT4G26510 83.156 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00005 K00876 - gmx:100792258 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00005 6 329943 340957 Spst8g01007 8 8748902 8755687 PCT