Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02165 ATGGAGAACCGGACCCAGGTTCGGTGCACGGAGAACCAAGAGCTGGCCGCGTACATGTGGAACAAGTGGCAGGAAATGGCGCAGCAAGCCAAAGGCATTTCTGATAACTTCGAAATGACCCTTTCCAAGGCCCACTTCAATGTCTGTAGCTCCAAAACCCCCATTCGAACCATCAAGGATTTCTCTCAAGTCAAGGGTGTGGGGAAAATGATATTGAGGCTCATGCAGGGGTTTTTTGGGACTGGTTCTGGTGGTTCTGAACCCAAAGATTTGACTAAAAAGGGAAAGCAAACTAAAGGAACCAAACGTTATTTGCCTCAGAGGAACTCTGTCGCATATGCATTGTTGATATCCCTTTACAGGGGAACTTCAAATGGGAATGAATTTATGCGGAAGCAGGAACTTATTGATGCTGCTGAAGCCAGTGGGCTATCTCGAGTGCCAATTGCGCCAGAAAAAGGGAAAGAAAAACCTGGACGTTTTGGAGGCTCTCCACGGGATTGGTATAGTGGATGGAATTGCATGAAGACCTTGATAGCTAAGGGATTAGTTGTAAAATCCAGCTGCCCTGCTAAGTACATGCTAACTCAAGAAGGGAAGGAAGCAGCTAGTGACTGTTTGGCAAGATCTGGAATGGCAGAATCTCTAGAGAAGTCGACTTCTGTTGAAATTCCTTTGTATTTGGATAACCAAAACTCATTGGATGTGGAACCCAATGGTCATGACATGGAACCTGAGGTGCTGTCACCATTGACTCAGCAAAAGATGCCTATGGATGTTCCTCTTGATTGCCTTGGGAGGATAAGAAACTACTGCAAAAGAGGCTTGGGATTGCTGAACAGGCATAGAAAGTTGTGGCCTTGTTGGCTTGAGATTGCTGAAAAACAGGGTACTGTGTACAAGATTGGGACTGACTATGAGATGGTTGATACAATTGAAAGAAGGTTAGGGTTTGATGAAGAATTTGGATCTGGACTTTGGAAGATAGCCATGGTTCAGTTTTCTCAAATGGGTTACTCCAAGGAACAAATTATTAGTGCTTTTACTGAAGTTTCCGGAAGCCAGCCAAATAAAGATGTCTCATCTCTGTGGCCAGCTGTTCTATGTCATCTCCGAGAAGAACAAGTCTATGGCTCACAGCCAGAATCTCTATGTTCAAGAGATCTCACTGGAAAAGAAAGCAGAGCCGTGCGCTCATCTTGTGATGGGCATGTAGCAAACACTTGTTCGCGTGATATTCCTCCTTTCCCCTTGAGAGGTTGCTCTTCAACTGACCATCCCATGCAAAATGCTAATAAGGATGAGCTTGTATCAAAGATGAACATTTTAAATGTTCCACCATTGAGCTTGGGGGAGAGATTTGAGGATGCTTATGACATAATTTTAATATTGGATGATCGGGAGCAATTTGCCACACAGGGGTTAGTTCGACGGTTACCAGTTGGAGATGGGATTTGGATAGCACACCATAAAACCCTTGACAGTGAATATGTGTTGGATTTTATTGTTGAGAGGAAGAAAATTGATGATCTACGCAGTTCAATCCGGGATAACCGCTACAAGGATCAAAAGTTAAGACTTCAGAGGTGTGGGTTGAAGAAGCTGATATATCTTGTGGAAGGTGACCCAAATTCTTCTGAAGCTGCTGAAAGCATAAAAACTGCTTGTTTTACAACAGAGATTCTGGAGGGATTTGATGTACAGAGAACAAGTGGCTTAGGTGATACTCTAAAGAAGTATGGTTATCTTACCCAAGCAATTTCTCAATATTACAAGTCAGAAATTTTTGAAGACAATATTAAATCCTCTGGGACATGTCCTCCTTTTGATGAATTTATTAAAAGGTGTCAAGACATTGAGAAAACAACTGTTAGTGATGTATTTGCCATCCAGCTTATGCAGGTCCCACAGGTTACAGAGGAGGTTGCCATGGCTGTGTTGGATCTGTTCCCCACACTTTTCTCTCTTGCCCGTGCTTACTCACTACTCGAAGGTGATGCTGGTGCCCAGGAGGAGATGCTTCGAAGACGGAGTAACAATATGATCAATGCAGTTGCCAGTAGGAACGAGAAGTCACCAAGTGCAGTGTCTGGCTTTCAACATGAATCCAATTTTATTTTGGAGAATCTTCCTAAGATTTTCCTTGCTATCCTCATCATCTTCCACTATGGAACAAGCATGGCCTGTTCACCACACCAGTGGCTGAGGGAGCTGAGATGGGACTCCCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATCTCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGGATGGTGACTTATTTCAGTGAAGCACTTGGATACAGAATAGTAAAACATTTGCCAGGTGTATATAAATCTATCAGTCCCTCAAAAACATCACTATCTTCAGAAGATATCCTTGTTCAGAAATACTTCTATGAATTGTGTCCCTTTTTGAAGTTCTCATACCTGATCACAAACCAAGCCATTGTAGAGGCCATGGAATGCGAAAAGGTGGTTCATATTATTGATCTCAATTGCTGTGAGCCAGCTCAGTGGATAGAACTTCTACTTACTTTTAAAAACCGTCGGGGAGGTCCACCCCATCTGAAAATTACAGGGATTCATGAAAAGAAAGAAGTTCTAGACCAAATGAACTTTCATTTGACATCTGAAGCTGGGAATTTGGATTTTCCTTTACAGTTCTATCCAGTTGTTAGCAAACTGGAAGATGTTGATTTTGAGAAGTTGCCTGTGAAGACAGGAGATGCTATTGCAATAACTTCTGTTCTTCAGCTGCATTCGCTTCTTGCCACTGATGATGACATGGCTGGAAGAATCTCCCCAGCCGCGGCAGTATCTATGAATCTTCAGAGAGCAGTGCATATGGGCCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATATCTTGAGTCCTGATTCTGCATTGTCACCTCTTTCCTTAGGTGCCTCACCTAAGATGGGGATTTTTCTCAGCGCTTTGCGAAAGCTCCAACCAAAACTGGTAGTAATCACTGAACAGGAATCAAATCTGAACGGATCCAATTTGATGGAGAGAGTTGATAAAGCGTTGTACTTTTACAGTGCGTTGTTTGACTGCTTGGACTCTACTGTTATGAGAACATCAGTTGAGAGGCAAAAACTTGAGAGCATGCTTCTTGGAGAGCAGATAAAGAATATCATTGCTTGTGAAGGAGTTGATAGAAAGGAAAGACATGAGAAACTCGAAAAATGGATTCGAAGGTTTGAAATGGCTGGTTTTGTAAAGGTTCCTTTGAGCTACAATGGGAGGATAGAAGCAATGAATCTGTTGCAGAGATATAGTAGTAAATACAAATTTCGAGAAGAGAATGATTGTTTGCTTGTTTGCTGGAGTGATAGACCATTGTTTTCTGTATCAGCTTGGACCCATGAAAGTCAAGATCACATTCCCAATGAAGCTTTACTTGCACTTAGGGACTTTGCATTCTCAAGGAAATGTTCATCTGCGTTCTTCAATAGGTTTGGCAATGTAAAATTGCCCGGTGTACATGGTCTTTTAGGTGCCCAAGGACCAACTTATGGACACAGTGCTCTTTACCAGTTTCCTGATAAAGCTATCTCTTATATATTAGATTCACCATACCCGTGGCTCAAAGATATGAATGGGGAGGATAGGGGTAAATACCTAGCCCGTATTCTTAACGCCTGTGCCAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCACATTGCCTCCCCTTATGGTGATGCAATGCAAAGGGTAGCCACCTATATTAGTAAGGGTCTAGTTTTCCAAGTTCTAAAAATTTTCCAGGGAGTACCTAGGGCTGTCAATTTGTCAAAAACAATGTCAACCTCAGAAGAACAACTGGTTAAGAAGACATTCTATGACCTGTATCCATTTTTAAAGACTGCATATGCAATCACGAGTAATGCCATTGCTGAAGCTATAGAAGGAGAAGAAGTAGTCCACGTCATTGATCTCGGTGCATCTGATGCTTCTCAGTGGATTTGTCTTATGCAGAGATTAAAACAAAGCCAAAAGAAGCTCCCATTTCTGAAAATCACAGGCATAAATGAGAAAAAGAAAATTTTAGAGGAAGTGGAGACTCACTTAAGAGTAGAAGCTAAAAGTTTGAATTTCAATCTCCAATTCAATGCTATTGTAAGCACTTTGGAGAATCTTGACCTAGAAGAATTGCCTGTGAAGAAAGGAGAGCCTCTTGCAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAATGGTTTGCATCAGGAGCTCGCAGGCAGAACCAGTGCATCAGAGGACATTTGCTGAGATGCTTGGGAAACAAAATACCAACCCCAGTTCTGAACCATCATTTTTACAACTTCCTCTATGCGCTACTTCAACCAAGATGATGCATTTTCTAAAAGGCCTGTGGAAACTCCAACCCAGAGTGATGGTGGTTACTGAACAAGAATCTAATTTCAATGGTTCTTTGACAGAAAGGGTTGACAAGGCATTGGACTTCTACGTTGCATTGTTCAACTGCTTGGAATCAACTGTTTCAACAACAGCACTGGTAGAGAGAATCATCATGGAGAGGACTCTACTAGGGGAAGAAATAAAGAACATAGTTGCATGTGAAGGAGTAGACAGAAAGGAGAGGCATGAGAAACTTGAGACTTGGATCCCAAGGCTAGAAATGGCCGGGTTTAGTAAGGGACATATTAGCCACCATGGAATGATGCAAGCAACAACACAGTTGCATGGTTATGGAGATGGATACAGGCTTTGTAAGGAAAATAATTGTTTGTTTGTATGCTGGAAGGATAAGCCACTCTTTTCTGTATCAGCCTGGACTACTTAG 4977 0.4219 MENRTQVRCTENQELAAYMWNKWQEMAQQAKGISDNFEMTLSKAHFNVCSSKTPIRTIKDFSQVKGVGKMILRLMQGFFGTGSGGSEPKDLTKKGKQTKGTKRYLPQRNSVAYALLISLYRGTSNGNEFMRKQELIDAAEASGLSRVPIAPEKGKEKPGRFGGSPRDWYSGWNCMKTLIAKGLVVKSSCPAKYMLTQEGKEAASDCLARSGMAESLEKSTSVEIPLYLDNQNSLDVEPNGHDMEPEVLSPLTQQKMPMDVPLDCLGRIRNYCKRGLGLLNRHRKLWPCWLEIAEKQGTVYKIGTDYEMVDTIERRLGFDEEFGSGLWKIAMVQFSQMGYSKEQIISAFTEVSGSQPNKDVSSLWPAVLCHLREEQVYGSQPESLCSRDLTGKESRAVRSSCDGHVANTCSRDIPPFPLRGCSSTDHPMQNANKDELVSKMNILNVPPLSLGERFEDAYDIILILDDREQFATQGLVRRLPVGDGIWIAHHKTLDSEYVLDFIVERKKIDDLRSSIRDNRYKDQKLRLQRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSGLGDTLKKYGYLTQAISQYYKSEIFEDNIKSSGTCPPFDEFIKRCQDIEKTTVSDVFAIQLMQVPQVTEEVAMAVLDLFPTLFSLARAYSLLEGDAGAQEEMLRRRSNNMINAVASRNEKSPSAVSGFQHESNFILENLPKIFLAILIIFHYGTSMACSPHQWLRELRWDSQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVTYFSEALGYRIVKHLPGVYKSISPSKTSLSSEDILVQKYFYELCPFLKFSYLITNQAIVEAMECEKVVHIIDLNCCEPAQWIELLLTFKNRRGGPPHLKITGIHEKKEVLDQMNFHLTSEAGNLDFPLQFYPVVSKLEDVDFEKLPVKTGDAIAITSVLQLHSLLATDDDMAGRISPAAAVSMNLQRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSLGASPKMGIFLSALRKLQPKLVVITEQESNLNGSNLMERVDKALYFYSALFDCLDSTVMRTSVERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIRRFEMAGFVKVPLSYNGRIEAMNLLQRYSSKYKFREENDCLLVCWSDRPLFSVSAWTHESQDHIPNEALLALRDFAFSRKCSSAFFNRFGNVKLPGVHGLLGAQGPTYGHSALYQFPDKAISYILDSPYPWLKDMNGEDRGKYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYISKGLVFQVLKIFQGVPRAVNLSKTMSTSEEQLVKKTFYDLYPFLKTAYAITSNAIAEAIEGEEVVHVIDLGASDASQWICLMQRLKQSQKKLPFLKITGINEKKKILEEVETHLRVEAKSLNFNLQFNAIVSTLENLDLEELPVKKGEPLAISSVLQLHTLLATDDAMVCIRSSQAEPVHQRTFAEMLGKQNTNPSSEPSFLQLPLCATSTKMMHFLKGLWKLQPRVMVVTEQESNFNGSLTERVDKALDFYVALFNCLESTVSTTALVERIIMERTLLGEEIKNIVACEGVDRKERHEKLETWIPRLEMAGFSKGHISHHGMMQATTQLHGYGDGYRLCKENNCLFVCWKDKPLFSVSAWTT 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02165 1658 SMART ERCC4_2 461 543 IPR006166 GO:0003677|GO:0004518
Spst5g02165 1658 CDD XPF_nuclease_Mus81 458 587 IPR047416 -
Spst5g02165 1658 Gene3D - 622 693 IPR042530 -
Spst5g02165 1658 FunFam crossover junction endonuclease MUS81 isoform X1 456 586 - -
Spst5g02165 1658 CDD WH_MUS81 104 209 IPR047417 -
Spst5g02165 1658 PANTHER CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 1 689 IPR033309 GO:0006302|GO:0006308|GO:0008821
Spst5g02165 1658 ProSiteProfiles GRAS family profile. 738 1164 IPR005202 -
Spst5g02165 1658 ProSiteProfiles GRAS family profile. 1242 1657 IPR005202 -
Spst5g02165 1658 FunFam Crossover junction endonuclease MUS81 96 217 - -
Spst5g02165 1658 Gene3D - 455 585 - -
Spst5g02165 1658 SUPERFAMILY Restriction endonuclease-like 458 586 IPR011335 -
Spst5g02165 1658 Pfam ERCC4 domain 476 576 IPR006166 GO:0003677|GO:0004518
Spst5g02165 1658 Gene3D - 96 218 IPR036388 -
Spst5g02165 1658 Pfam GRAS domain family 748 1164 IPR005202 -
Spst5g02165 1658 Pfam GRAS domain family 1253 1657 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02165 Spst-Chr5 56990467 57008782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02165 1234 1656 GRAS Transcription Factor Family AT1G50420 43.371 9.28e-113 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g02165 GRAS 5.1e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02165 - K08991 gmx:106798410 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02165 5 56990467 57008782 Spst5g02165 5 56990467 57008782 ECH