Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02146 ATGGAAATCGCGGAAAAGAAAAGTTTTTCTATATTGTTGTCAGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTTGCGAAGAACTCTGAATTTGAAGTGCATATTTTTGCGGAGTTTGCCATGTTGGTTGAGAAATTCCCATCAATCTTCAATGACTTGAGAGACAAAAACACAGTCTTAGATAAGCCACCGATAAGAAAATCCTTGGAATCACTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCTAATTTGAGGCAACCGATCAAGCAAATCGAGGACATAACACATGACATCGGTCGATCCTTTGGCCTTCTGCTTGTAGCCAGCCTAGAAGTTTCCGTGGATTTCAGAGAAAAAATCGGTACATTGCAAAGACAATTGATGAATGTGAGATTTGATAGCAGTTTAAGTCTAGCTTCAAGTCCAAAATCAGAGGTTTCCTGCAGTGACATGAAGCTGACTGGAGAAATAGAAGAGGAAATAGTTAATGTTTCTATTGATGAGGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAAGTTGCAGTTTCACTTTTGAGACTGAATGATTTCATGAGGAGTGAAAGACTGGATGGTGGGTTGATCAATGAGGAAGCAACTCTTGCCATTCTTTTCAATCGTTTAGGTTCGTGTAAGGCAGACAATAGGTTGGCAATCATGCGACTGCTAAGATGTATTGCTTTAGAAAATGATCAGAAAAAGGAGAGGATGGTACACATTGAGTTCTTATCAGCAGTGGTGAAGTCCCTCACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTGGGGCTATTGCTAGAACTCTCTGACGTGCAGGCCGTTCGACGGCGAATTGGACGAATTCAAGGGTGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGATCCTGATGCCTCACATTCTGCTGCAAAGTTATTGGATATATTGTCCAGTAATACTCAAAATGCACTTCATATGGCCGAGGCTGGTTACTTTAGGCCACTTGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATTCTAATGGCGACAGCACTCGCAAGGTTGGAACTCACTGATCACAGCAAACTTTCCCTTGGAGAAGATGGGGCAATTGAGCCCCTTGTCAAAATGTTCGGTATTGGGAAACTTGAGTCCAAGTTATCCGCTCTAAATGCACTACAAAATCTGTCAACCTTGGCAGAAAATGTGCAGCGTTTGATCAGATCCGGAATTGCAGGATCTCTTCTGCAACTTCTTTTCTCAGTTACATCTGTGCTCATGACATTGCGCGAGCCTGCATCTGCCATTCTTGCAAGAATCGCTCAGTCTGAGTCCATCCTTGTTAACGAAGATGTTGCTCAGCAGATGCTTTCACTTTTGAGTCTTTCCAGCCCTATAATTCAAGGTCATCTGTTAGAAGCTCTAAATAACATAGCCTCCCATCCTGGTGCATCCAAAGTGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAGCTGCTCTTACCCTTTCTGAAGGAAAACACAACCAGAGTCAGGACCAAGGTCTTGCATTTGTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTTATCTTTTCAACATAGCAAATATAGTCTCAACATCAACATCAGATAGTGAAAGGGCAGCAGCTGTTGGCATACTGAGTAATCTTCCTGCTAGTAATAAAAAAGTGACAGATATGCTGCAGAGGGCAAATTTGTTACCCATTTTAATATCCATTATGTATACTATCACAGGAAGTAACTCATCCACAACAAATACCTTAGCAGAAAGTATTGCCAGTGTTATTATTCGCTTCACAAATCCCTCTGACAAGAAACTACAACTTCTCTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTAAAACTTCTCTCAAGTGGTTCATCAATCACAAAATCAAGGGCTGCAGTCTCTCTGGCTCAACTATCGCAGAATTCTGTGTCTCTTAGGAAGTCTAGAAAGTCAAGATGGTTGTGTGTTCCACCCTCTGTGAATGCATATTGTGAAGTCCATGATGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTACCCTTATCCAATTGTTGGAAGATACTGAGAGAGAAGTTGTTGAATCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGCGTCAATTCCATTGCCAAGTTATCAGGCGTGCAAGCTATTATAAAAAGTCTAGAAGTTGGGGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAAGTTGCAGAATATAGAGTAAAGTATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAAAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTAGCTGAGCTTGAGCTCTTACAATCTCAATCAAGTTACTTTTGA 2493 0.4103 MEIAEKKSFSILLSELIVLADEVASLAKNSEFEVHIFAEFAMLVEKFPSIFNDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEVSVDFREKIGTLQRQLMNVRFDSSLSLASSPKSEVSCSDMKLTGEIEEEIVNVSIDEVVLQLKNGNDEEVAVSLLRLNDFMRSERLDGGLINEEATLAILFNRLGSCKADNRLAIMRLLRCIALENDQKKERMVHIEFLSAVVKSLTRDSEERKEAVGLLLELSDVQAVRRRIGRIQGCIVMLVAILNGDDPDASHSAAKLLDILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALARLELTDHSKLSLGEDGAIEPLVKMFGIGKLESKLSALNALQNLSTLAENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLSLSSPIIQGHLLEALNNIASHPGASKVRRKMKEKGALQLLLPFLKENTTRVRTKVLHLLYTLSKDLTDELTEHLDETYLFNIANIVSTSTSDSERAAAVGILSNLPASNKKVTDMLQRANLLPILISIMYTITGSNSSTTNTLAESIASVIIRFTNPSDKKLQLLSAEQGVIPLLVKLLSSGSSITKSRAAVSLAQLSQNSVSLRKSRKSRWLCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSTLIQLLEDTEREVVESALHALSTLLQDEIWEGGVNSIAKLSGVQAIIKSLEVGDAKVQEKAIWMLERIFKVAEYRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02146 830 Gene3D - 455 676 IPR011989 -
Spst5g02146 830 SMART arm_5 365 405 IPR000225 GO:0005515
Spst5g02146 830 SMART arm_5 491 531 IPR000225 GO:0005515
Spst5g02146 830 SMART arm_5 698 738 IPR000225 GO:0005515
Spst5g02146 830 SMART arm_5 324 364 IPR000225 GO:0005515
Spst5g02146 830 SMART arm_5 242 281 IPR000225 GO:0005515
Spst5g02146 830 SMART arm_5 742 782 IPR000225 GO:0005515
Spst5g02146 830 SMART arm_5 626 666 IPR000225 GO:0005515
Spst5g02146 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 174 830 - -
Spst5g02146 830 SUPERFAMILY ARM repeat 354 783 IPR016024 -
Spst5g02146 830 Coils Coil 70 90 - -
Spst5g02146 830 Gene3D - 697 828 IPR011989 -
Spst5g02146 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 709 736 IPR000225 GO:0005515
Spst5g02146 830 Gene3D - 204 454 IPR011989 -
Spst5g02146 830 SUPERFAMILY ARM repeat 171 427 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02146 Spst-Chr5 56797768 56800940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02146 235 830 U-box Gene Family AT1G76390 29.830 1.41e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02146 K08332 - gmx:100791453 1362.82