Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02127 ATGCATTTGTTTGATGTTTATAAGGTTATGATTTTGATTCTTGAACGTTCTGATGGCATTGTGTCCGTTGACCTTGTTCATGTGACACAATTTGATGCTAATGTAAGGCAGTTGAAGAGTGTCGTGAATTCCTTTTCCTTTTCATTCTCAAAAGGGCTGCTGTTGGTTGGTTGTCAAAGCATGGCATCTAGTCATCCATTCTTTGATGATATACGTAGCAGATCTAGTGTTGATCCTCCTCAAACGGAAGAGCCAACTGAAATTGGTGAACTTGTGAATGAACCTCTGCAGACTGCTCTTAAACCTCATGGGACTGTTTCAAGCAGTGTTCGTGAGCTATTAGAGTGCCCTGTGTGTTTAAATGCTATGTACCCTCCAATTCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGTCCTACATGTAGGCATGAGCTAGGAAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCCAAAGCATGAATCTCAATGTGTATTTAGACCTTATAATTGTCCATATGCTGGTTCAGAATGCTCTGTTATGGGTGATATACCTTACCTGGTAACCCATCTGAAAGATGATCATAAAGTGGACATGCACAATGGTTGTACTTTTAATCATCGCTATGTCAAAACAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCACCTGTCTACATAGCGTTTTTGCGGTTTATGGGCGATGACAACGAGGCAAAGAACTACACCTACAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGATTTGGCAAGGTGTGCCTAGAAGCATTCGGGATAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGAAACATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTGCGAGTCACCGGAAGAATTTGGAAAGAGCAGTGA 1095 0.4228 MHLFDVYKVMILILERSDGIVSVDLVHVTQFDANVRQLKSVVNSFSFSFSKGLLLVGCQSMASSHPFFDDIRSRSSVDPPQTEEPTEIGELVNEPLQTALKPHGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKPKHESQCVFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02127 364 FunFam E3 ubiquitin-protein ligase SINAT5-like 225 357 - -
Spst5g02127 364 CDD Sina 230 358 - -
Spst5g02127 364 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 224 357 IPR008974 GO:0005515
Spst5g02127 364 SUPERFAMILY RING/U-box 108 156 - -
Spst5g02127 364 SUPERFAMILY TRAF domain-like 169 361 - -
Spst5g02127 364 ProSiteProfiles Zinc finger SIAH-type profile. 169 229 IPR013010 GO:0008270
Spst5g02127 364 FunFam E3 ubiquitin-protein ligase SINAT3 168 224 - -
Spst5g02127 364 ProSiteProfiles Zinc finger RING-type profile. 116 152 IPR001841 -
Spst5g02127 364 FunFam E3 ubiquitin-protein ligase SINAT5-like 74 167 - -
Spst5g02127 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 223 IPR013083 -
Spst5g02127 364 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 94 363 - -
Spst5g02127 364 Pfam Seven in absentia protein family 158 357 IPR018121 GO:0005737|GO:0006511|GO:0007275
Spst5g02127 364 CDD RING-HC_SIAHs 114 152 - -
Spst5g02127 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02127 Spst-Chr5 56647003 56650410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02127 107 364 C3H Transcription Factor Family AT2G41980 79.457 2.93e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02127 K04506 - gmx:100793457 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02127 5 56647003 56650410 Spst5g02127 5 56647003 56650410 ECH
Spst5g02127 5 56647003 56650410 Spst11g00116 11 2484610 2488435 PCT