Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02124 ATGTTTTCCAAGGTTTTAAAAACAGGAAAGAACATCAGGCGAAGACGGTCTAACACAGAAAAGAACGTTGTTGGAAAATGGTCAGAGGATGAAATATCAATAGCTGAGTTTCTAATTCAGAAAAGTGGAAAATATCCAAAAATATGGCATGAAAATACTTTTGGCAATGAAAAACCACCATCAACATTTGAAGGTGACAGTGGCAGAACTCCTGAAGAACATGTTTCTTTGGAAACTCAACATGAAGAAGATCAAAACACAGAAGATTCACCGTCGAAGGAAAGTTTTTCCTCACAAGAAACTCTCACCCATGACAATGGTTTTGATAATGCTTCTTTTTCACCACCACCTCTGGGGAGCTTTAGAGACTATATCTTAGAGCGTGGTGAGGCTCTTGAGAAACAATTGACAACCAGTGATGTCAATGTTAATCAAAATAGACTTTTTCTCTGCAAAAATCATGTGGAAAAATCGTTTCTACCATTGCTGAAAGATGGTGAAAATATTGAGAATGGAATAAAAGTTTGCGCTTATGATATTCATAACAATCGTTACAATCTCACATTCAAGAAGTGGACAAACAAATACTACGTGTTGAATGGTGGATGGAAAGATTTCTTCCAAGCTCATAACCTGCAGAAAGATGATATCGTCACAGTGTGGATATTTCGTCATTCAAAGAATAACAAGTTATGTTTTGCTCTTGAATATCAAAAGATTGAAAGGTGA 729 0.3608 MFSKVLKTGKNIRRRRSNTEKNVVGKWSEDEISIAEFLIQKSGKYPKIWHENTFGNEKPPSTFEGDSGRTPEEHVSLETQHEEDQNTEDSPSKESFSSQETLTHDNGFDNASFSPPPLGSFRDYILERGEALEKQLTTSDVNVNQNRLFLCKNHVEKSFLPLLKDGENIENGIKVCAYDIHNNRYNLTFKKWTNKYYVLNGGWKDFFQAHNLQKDDIVTVWIFRHSKNNKLCFALEYQKIER 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02124 242 Pfam B3 DNA binding domain 133 228 IPR003340 GO:0003677
Spst5g02124 242 ProSiteProfiles B3 DNA-binding domain profile. 133 239 IPR003340 GO:0003677
Spst5g02124 242 SUPERFAMILY DNA-binding pseudobarrel domain 133 234 IPR015300 -
Spst5g02124 242 CDD B3_DNA 134 233 IPR003340 GO:0003677
Spst5g02124 242 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 21 235 IPR005508 GO:0003677
Spst5g02124 242 MobiDBLite consensus disorder prediction 91 110 - -
Spst5g02124 242 MobiDBLite consensus disorder prediction 50 115 - -
Spst5g02124 242 MobiDBLite consensus disorder prediction 67 90 - -
Spst5g02124 242 Gene3D - 127 239 IPR015300 -
Spst5g02124 242 SMART B3_2 132 235 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02124 132 239 B3 DNA Binding Superfamily AT4G03170 43.636 8.95e-23 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst5g02124 B3 8.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02124 - - vum:124833533 235.728