Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02116 ATGCTTTCTTATCCAGACTATTGTAGGAAGACTCATGGAGAAAATGGAAGCATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAACAACATTTCAATGTTAGCAATTCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATTTTCAAGACACTACCTGGTGTAGGTAAACAACAGAGATTTAATATTTCGAAAATAATTCCTATGAGTAGCTCATGCAGATCAGGCATTTGGGAGATGTCCGATGATATTTTAACTAAAATTTTATATTCATTGGACCCACTGGACCTCACTAGGGTTTCTGCAACATGTCATCATCTAAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGAAGCAGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAGCTCTTGCCACACCCTTTATATGTAGCTCTCTCAACTGAAGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATTGTCACTGGGGAAGCTCCCACAGTAAGGGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCCCCAGATGGGGCACAAGTTGTCTGGTGTCAACATAAAGGTAATCAGAAATGTGGTTATTATGAGATCAGTGGTAATAACATCACTGGTTGTTCTACTTTGGGTAAGAGGGATGTGTGCCAAGATATCAGTAGAACTATTGATAACCACAATTACTCCTCAAAAAGAGCCAGATTGTCAGATCCGGATCAGCAAATTACTAACCTTAATGGTTCATGTTCCAGGGAATTAAACAAATCACCTGCAGATGAATGCTTTCAGGAACCTATGGATTCAAATCAGTACACTAGGAGTTTGAGCCGCATAAAGAAAAATCTATACATCACATATGAAGAGGAAGCAATGATTTCCAAGGAAAGAGAAATTGGTGAAGGATTAATCAAAGCAAAGCATGCGTCAGATGTTACATCTCATGTATCCCAAAACAAGTTGTCTGGGAGGCCTGAAGGTGATCATTTTGGGAACAGTGATACATGGATTCAGTGCGATGCTTGTCACAAGTGGCGAAAGCTTGCAGATGATAGTATGGCTAGTTCTAGTGCAGCATGGTTTTGTAGTATGAATACTGATCCTCTTTATCAAAGTTGTAATGTCCCTGAACAACATTTTCATAACACTTCTGAGATAACACACTTGCCAGGGTTTCACTTAAAAGGAACTCACGGTGGTGAGAGACAAAATGTTTCTTTTTTCACCAGTGTGCTTAAGGAGCACTACTCATTGATAAATTCTCAGACAAAGAAAGCCCTGACTTGGTTGGCTAAAATTTCAACAGACAAACTTGCAGGAATGGAAACAAATGGAATAAGAGGTCCTATTTTAAACACTTGCATTGCATCTGGTAGACATTGTAATGCATTCCACAAAATATTTCAAGCATTTGGCCTCATAAAGAGAGTAGATAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGACGTAGCTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCACGTGAGGCCTGGTCAACTGCGGGTTTATGTTTGGACTGATCATCGGAAGCCATCTGTGCATTGTCTTGCGTGGGATTATGATGTTGTCATAACTACTTTTAGTCGATTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGATAATTTTGGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCAATGATAGCTTCAAATCGATGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAACCATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGACCATATGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTACGTTTAATTCACAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCATCAAAAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCCAGAAGTTACAATGAATTGGTAATCACTGTACGGCGAAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGGAGGGCAACCATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTAGAAAGTGGTCTGGATCCTACTTCAGGAGAGTATACCTCCATAAGATATAATCTTTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAAAGGTGCCGTCTTCCAGTCATTACACCATGCCGACATCTGTTGTGCCTTGATTGTGTTTCTGTAGACAATACAAAGTGTACTTATACTGGCTGCAGTAAATTGTATGAGATGCAAAGTAGGCTTCCCCGACCTGAAAATCCTAATCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCATGGTTTATGAAAAACTCAGATAATTGGGATCCTGATTGGCAATCCACATCTAGTAGTAAAGTATCCTACCTTGTTCAGAGGTTGAAAGCCTTGCAAGGAACAAATGAAGAGTCAAGCTTCGATCCAGATAATAGCAATGATGAGATGCATATAGAGAATAGTTTCTATCTGCATGAGGATAAATCAACATTTCAGAAGTGTTCTAAGAGCAACACGAAGACCAATTTGAACCTTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACGGGCATGTATAGCCCAATGCATTTCAGCAACAAGAAGAAGTCTTTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGAATGGGTGCTTCTCGTCCTATTTACGTGGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGTTAGACTTTTTACAGGATGCTGATAAATGTAGAAGATCGCCGATTAAGGATGTTGCTGAATCTGAAGACGATAGTGGGGGACGAGGATATAGGTCCTTGCATGATTTTGCTGAAAGCAGTTATCTATTGAAACTTAGATCTGTGTATACTAATTCAGAAAGTCCAGAAGATGAAGAGATAATCATAGATGGAAGAATGAATAGAGTACCACTTGTTGGTGGAATATCACCTGTGAGTGACAGACAGGTGGAGTTTCGTGGGGTGATTTGA 3600 0.4011 MLSYPDYCRKTHGENGSIWNLSDCHVLCCKQHFNVSNSSRKRLFELHEIFKTLPGVGKQQRFNISKIIPMSSSCRSGIWEMSDDILTKILYSLDPLDLTRVSATCHHLRSLAASVMPCTKLNLFPHQREAVEWMLHRERNAELLPHPLYVALSTEDGFSFHVNTVSGEIVTGEAPTVRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAQVVWCQHKGNQKCGYYEISGNNITGCSTLGKRDVCQDISRTIDNHNYSSKRARLSDPDQQITNLNGSCSRELNKSPADECFQEPMDSNQYTRSLSRIKKNLYITYEEEAMISKEREIGEGLIKAKHASDVTSHVSQNKLSGRPEGDHFGNSDTWIQCDACHKWRKLADDSMASSSAAWFCSMNTDPLYQSCNVPEQHFHNTSEITHLPGFHLKGTHGGERQNVSFFTSVLKEHYSLINSQTKKALTWLAKISTDKLAGMETNGIRGPILNTCIASGRHCNAFHKIFQAFGLIKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISMIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPYEAEMEEGRSRLLRLIHKCMISARKIDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESGLDPTSGEYTSIRYNLLYGGHCVRCKERCRLPVITPCRHLLCLDCVSVDNTKCTYTGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQAWFMKNSDNWDPDWQSTSSSKVSYLVQRLKALQGTNEESSFDPDNSNDEMHIENSFYLHEDKSTFQKCSKSNTKTNLNLEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHFSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADKCRRSPIKDVAESEDDSGGRGYRSLHDFAESSYLLKLRSVYTNSESPEDEEIIIDGRMNRVPLVGGISPVSDRQVEFRGVI 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02116 1199 Gene3D - 904 1166 IPR027417 -
Spst5g02116 1199 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 88 1116 - -
Spst5g02116 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 721 IPR027417 -
Spst5g02116 1199 SUPERFAMILY F-box domain 72 114 IPR036047 GO:0005515
Spst5g02116 1199 CDD RING-HC 843 869 - -
Spst5g02116 1199 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 986 1136 IPR001650 -
Spst5g02116 1199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 681 IPR014001 -
Spst5g02116 1199 CDD SF2_C_SNF 995 1100 - -
Spst5g02116 1199 Gene3D - 530 725 IPR038718 -
Spst5g02116 1199 SMART helicmild6 1008 1090 IPR001650 -
Spst5g02116 1199 Gene3D - 355 416 - -
Spst5g02116 1199 Pfam SNF2-related domain 126 767 IPR000330 GO:0005524|GO:0140658
Spst5g02116 1199 Pfam Helicase conserved C-terminal domain 989 1090 IPR001650 -
Spst5g02116 1199 Pfam CW-type Zinc Finger 368 411 IPR011124 GO:0008270
Spst5g02116 1199 ProSitePatterns Zinc finger RING-type signature. 859 868 IPR017907 -
Spst5g02116 1199 SMART ultradead3 119 692 IPR014001 -
Spst5g02116 1199 SMART fbox_2 81 121 IPR001810 GO:0005515
Spst5g02116 1199 ProSiteProfiles Zinc finger CW-type profile. 363 414 IPR011124 GO:0008270
Spst5g02116 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 1146 IPR027417 -
Spst5g02116 1199 CDD F-box_SF 80 112 - -
Spst5g02116 1199 CDD DEXDc_SHPRH-like 545 722 - -
Spst5g02116 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 205 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02116 Spst-Chr5 56558213 56570049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02116 551 1110 RAD5 or RAD16-like Gene Family AT5G22750 24.834 8.04e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst5g02116 SNF2_N 7.2e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02116 - - gmx:100803102 2115.12