Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02107 ATGAAAATCCCGTGTTGTTCGGTTTGCCAAACGCGGTACAACGAGGAGGAGAGAGTTCCGCTTCTGCTCCAATGCGGGCACGGCTTCTGCAGAGAGTGTCTCTCTATAATGTTCGCGGAGTCTTCGGATGCCACGCTGGCGTGTCCGAGGTGCCGACACGTGTCCACCGTGGGGAACTCGGTGCAGGCGCTGCGGAAGAACTACGCGGTCCTCGCGCTGCTCAACTCCACGACCGCAGCTGCGAACGGCGGAGGGGGAGCAGGAGGAGGGGCGAATTTTGACTGCGACTGCACAGACGACGAGGAGGACGAGGACGGCCGCGGGGAGGTGGACGAGGAGGACGAGAAGCGGCGGCGGAACAGCCGCGAGTCGCAGGCGTCGAGCTCCGGTGAGTGCGAGCCGGTGATCGAGGTCGGCGGCGCGCACCAGGACTTGAAGTTGGTGCGGCGGATTGGGGAGGGGAGGAGGGCGGGTGTGGAGATGTGGATGGCGGTGATCGGCGGTGGCAGTGGAGGGGAAGGAGGACGTCGGTGCCGGCACAGCGTGGCGGTGAAGAAGGTGTCGGTGGTGGAGGGGATGGATTTGGATTGGGTTCAGGGAAAGTTGGAGGATTTGCGTAGGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTCCATGGGACAATGAGGCTGGAGGACAGTTTGTGCCTGGTGATGGATAAGTGCTATGGATCGGTTCAGTCCGAGATGCAGCGCAATGAGGGGAGGCTCACTTTGGAACAAGTCCTAAGATATGGGGCTGATATTGCACGTGGAGTTGTTGAGCTTCATGCTGCAGGCGTTGTTTGCATGAATTTAAAACCGTCCAATCTTCTTCTTGATGCTAATGGTCACGCTGTGGTTTCTGATTATGGACTTGCTACAATTCTGAAGAAGCCTTCCTGTTGGAAGGCACGACCAGAGTGCGACTCTTTGAAGATCCACTCCTGTATGGAATGTATAATGCTCAGCCCACATTATACAGCACCGGAGGCTTGGGAACCTGTGAAGAAGTTAAATCTGTTTTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTTCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATAGAGCTGCTGTTAAAGCTAAGAAACTGCCTCCACAGTATGCTAGCGTGGTTGGAGGTGGAATTCCGAGGGAATTGTGGAAGATGATCGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCCACTTTTAGCGCAATGCTGGCAATATTTCTCCGTCATTTGCAGGAAATACCCCGCAGCCCTCCTGCAAGCCCTGATAATGGCTTAGATAGTAAGGGTTCTGTATCAACTGTGATGGAGCCTTCACCAGTACCTGAATTGGAAGTTCCTCAGGAAAATCCTAACCATCTTCATAGACTTGTGTCTGAAGGAGATACTACAGGTGTTAGGTTAGTTGGTGTCACAGCACTTCTTGTCTGA 1521 0.5378 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCRECLSIMFAESSDATLACPRCRHVSTVGNSVQALRKNYAVLALLNSTTAAANGGGGAGGGANFDCDCTDDEEDEDGRGEVDEEDEKRRRNSRESQASSSGECEPVIEVGGAHQDLKLVRRIGEGRRAGVEMWMAVIGGGSGGEGGRRCRHSVAVKKVSVVEGMDLDWVQGKLEDLRRASMWCRNVCTFHGTMRLEDSLCLVMDKCYGSVQSEMQRNEGRLTLEQVLRYGADIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATILKKPSCWKARPECDSLKIHSCMECIMLSPHYTAPEAWEPVKKLNLFWDDGIGISSESDAWSFGCTLVEMCTGSIPWAGLSAEEIYRAAVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFSAMLAIFLRHLQEIPRSPPASPDNGLDSKGSVSTVMEPSPVPELEVPQENPNHLHRLVSEGDTTGVRLVGVTALLV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02107 506 FunFam E3 ubiquitin-protein ligase KEG 236 451 - -
Spst5g02107 506 Pfam RING-type zinc-finger 6 49 IPR027370 -
Spst5g02107 506 CDD RING-HC_KEG-like 3 59 - -
Spst5g02107 506 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Spst5g02107 506 Pfam Protein kinase domain 167 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g02107 506 SMART ring_2 6 51 IPR001841 -
Spst5g02107 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Spst5g02107 506 MobiDBLite consensus disorder prediction 99 133 - -
Spst5g02107 506 SUPERFAMILY Protein kinase-like (PK-like) 134 453 IPR011009 -
Spst5g02107 506 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Spst5g02107 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 497 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Spst5g02107 506 ProSiteProfiles Protein kinase domain profile. 145 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g02107 506 MobiDBLite consensus disorder prediction 446 480 - -
Spst5g02107 506 Gene3D Transferase(Phosphotransferase) domain 1 235 454 - -
Spst5g02107 506 SUPERFAMILY RING/U-box 5 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02107 Spst-Chr5 56478372 56480788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02107 122 470 MAP Kinase Kinase Kinase AT1G53570 24.054 6.96e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Spst5g02107 Pkinase 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02107 K16279 - gmx:100777576 871.307