Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02101 ATGGGTGAGCCCAAAGTTAGAGATATCAGACGCTATTTCTGCAAGTTTTGCGGTGTTTGCAGATCCAAAAAGGCCCTCATCACCTCTCACGTCAATTCACATCACAAGGAGGAGGTCGAAAAGGAAAGAGCTAAAAGAGAAAGAGCACCCGAAGCTGAAGCTGTGAAAACCAACACGTGCGGGGAATGCGGTGCCGGTTTCAAGAAACACGCTTATTTGTTGCAGCACATGCAAAGTCATTCGCTTGAGGACTCCATAAGAACTCATTTTCTCCAGTGCATGTTTAGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCGTTCACGCAAAATTGAGAGGCCATATGTGTGTGTTGTTGATGATTGTCAGGCAAGTTACCGAAGGAAGGACCACCTGACTCGTCACCTTTTACAGCATCAAGGGAAGATTTTTAAATGCCCTGTTGAGAACTGCAGCACTGAGTTCTCTTTGCAAAGCAATGTGACACGACATGTTGAGGAGGTCCATGATGACAGTTCTACCTATACCAGTGACAAAACTCACATGCAGCATACATGTCCAGAAATTGGCTGTGGAAAGATTTTCAGATTTGCATCACAGCTACGAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGAACTGGTGTGCTTAGAGCCTGGTTGCATGAAAAATTTCACCAATGCTCAGTGCCTTCAAGCCCATGTAAAATCCTCTCATCAATACATGACCTGTGAAACATGTGGTACTAAGCAGCTAAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTGTCAGTTCATCAGAGACCTTTCGATGCGGGTTTAAGGGTTGTAGCTGCACATTCTCAAGAAAATCTAATCTTGGGAAGCATAAGAAGGTTGTGCACTTTAAGGAAAAGCCTTTTGTGTGCGGATTTCCTGACTGTCGCATGAGATTTGCTTACAAACATGTGCGAGATAACCACGAGAAAACCGCAAAACATGTTTTTACCCTTGGTGATTTTGAAAAGGCTGATGAGGAGTTCAGGTCAAGACCAAGGGGAGGGAGGAAGAGAAAATGTCCTACGGTTGAAATGTTAGTCAGGAACAGGGTTACCCAACCGAGTGAATTGGAGAGTTGGTTACTCATGCAGGATAGTGAGTAA 1182 0.4442 MGEPKVRDIRRYFCKFCGVCRSKKALITSHVNSHHKEEVEKERAKRERAPEAEAVKTNTCGECGAGFKKHAYLLQHMQSHSLEDSIRTHFLQCMFRLDGSVSGRETSCEAPSRMPRSRKIERPYVCVVDDCQASYRRKDHLTRHLLQHQGKIFKCPVENCSTEFSLQSNVTRHVEEVHDDSSTYTSDKTHMQHTCPEIGCGKIFRFASQLRKHEDSHVKLESVELVCLEPGCMKNFTNAQCLQAHVKSSHQYMTCETCGTKQLKKNIKRHLRSHEAVSSSETFRCGFKGCSCTFSRKSNLGKHKKVVHFKEKPFVCGFPDCRMRFAYKHVRDNHEKTAKHVFTLGDFEKADEEFRSRPRGGRKRKCPTVEMLVRNRVTQPSELESWLLMQDSE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 195 217 IPR013087 -
Spst5g02101 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 183 IPR013087 -
Spst5g02101 393 Pfam Zinc finger, C2H2 type 124 148 IPR013087 -
Spst5g02101 393 Pfam Zinc finger, C2H2 type 283 308 IPR013087 -
Spst5g02101 393 Pfam Zinc finger, C2H2 type 193 217 IPR013087 -
Spst5g02101 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 222 IPR013087 -
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 155 178 IPR013087 -
Spst5g02101 393 SUPERFAMILY beta-beta-alpha zinc fingers 10 80 IPR036236 -
Spst5g02101 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Spst5g02101 393 SMART c2h2final6 225 250 IPR013087 -
Spst5g02101 393 SMART c2h2final6 314 340 IPR013087 -
Spst5g02101 393 SMART c2h2final6 193 217 IPR013087 -
Spst5g02101 393 SMART c2h2final6 124 148 IPR013087 -
Spst5g02101 393 SMART c2h2final6 12 34 IPR013087 -
Spst5g02101 393 SMART c2h2final6 283 308 IPR013087 -
Spst5g02101 393 SMART c2h2final6 58 80 IPR013087 -
Spst5g02101 393 SMART c2h2final6 153 178 IPR013087 -
Spst5g02101 393 SMART c2h2final6 253 274 IPR013087 -
Spst5g02101 393 SUPERFAMILY beta-beta-alpha zinc fingers 265 320 IPR036236 -
Spst5g02101 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 283 313 IPR013087 -
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 227 250 IPR013087 -
Spst5g02101 393 Gene3D Classic Zinc Finger 3 88 - -
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 126 148 IPR013087 -
Spst5g02101 393 SUPERFAMILY beta-beta-alpha zinc fingers 151 179 IPR036236 -
Spst5g02101 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Spst5g02101 393 Gene3D Classic Zinc Finger 150 190 - -
Spst5g02101 393 Gene3D Classic Zinc Finger 100 149 - -
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 285 308 IPR013087 -
Spst5g02101 393 Gene3D Classic Zinc Finger 191 275 - -
Spst5g02101 393 Gene3D Classic Zinc Finger 278 345 - -
Spst5g02101 393 SUPERFAMILY beta-beta-alpha zinc fingers 121 150 IPR036236 -
Spst5g02101 393 PANTHER ZINC FINGER PROTEIN 4 382 - -
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 316 340 IPR013087 -
Spst5g02101 393 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02101 Spst-Chr5 56448308 56450988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02101 120 343 C2H2 Transcription Factor Family AT1G72050 49.638 4.16e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g02101 zf-C2H2 0.01 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02101 K09191 - gmx:100801812 583.563