Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02098 ATGGAGGATAAATCAGAGAAGAAAGATGATAGCCACCCATCTCTTCTCCTCCCTAATCGTGGCACCATCAAGGAAGACAATTCTCCAAAGAAAGCCATTGGTGGTGGCAGTGACAGGCTGAAGAGGGATGAGTGGAGTGAAGGGGCTGTGTCAACCCTTCTTGAGGCCTATGAGGCCAAATGGGTGCTCAGAAATAGAGCCAAACTCAAGGGTCATGACTGGGAAGATGTTGCAAAACATGTCTCATCAAGAGCCAACTCCACCAAGTCACGAAAGACACAGACTCAGTGCAAGAACAAGATTGAGTCCATGAAGAAAAGGTACAGATCAGAGTCTGCAACCACTGCTGATGCATCATCTTGGCCTTTGTACTATCGCCTTGATCTTCTCCTGCGTGGCACAGGTCCAATATCTTCACTCCCACCACCAACAACAACAGCCCCATCGTTTCAACCACCACATGCTAACCAGGCTTTGGTGTTGTTGGAGCCTCCTTCATTGGCTGTGTCACAAGCTCCCCCTTCTGTTGCTCCTCCACCACTCACAGTTGCACAAAACTCACATGGATCCAATGGTGTTGAAAGACTAGCCAAGGAAGATGGGTTAGGAGCCAAGTCATTTGAGCATGTATCTAACAAGAATCCAATGGACTCGGATAGCAGCACACCTGCTCTATACAGTGAAAAGGAGAAGGTGATCAGATGCAACAAGAAGAAGATGAAAAGTGAGAAGAAGATGAAGAAGAGGGTGAGAAGGAACAGTAACAGTAACAGTAACAGTAACAGTAATGATAATAAGAATGAAGAGATGGACATAGGAGAGAGCATAAGGTGGCTAGCAGAAGTGGTGGTGAGGTCAGAGCAAACGAGAATGGAGACAATGAAAGAGATTGAGAAGATGAGGGTTGAAGCTGAGGCAAAGAGAGGGGAAATGGAGCTGAAGAGAACTGAAATCATAGCCAATACTCAACTAGAGATTGCTAGGATCTTTGCAAGTGTCAATAAAGGTGTTGATTCTTCACTAAGAATTGGAAGAAGTTAA 1041 0.4553 MEDKSEKKDDSHPSLLLPNRGTIKEDNSPKKAIGGGSDRLKRDEWSEGAVSTLLEAYEAKWVLRNRAKLKGHDWEDVAKHVSSRANSTKSRKTQTQCKNKIESMKKRYRSESATTADASSWPLYYRLDLLLRGTGPISSLPPPTTTAPSFQPPHANQALVLLEPPSLAVSQAPPSVAPPPLTVAQNSHGSNGVERLAKEDGLGAKSFEHVSNKNPMDSDSSTPALYSEKEKVIRCNKKKMKSEKKMKKRVRRNSNSNSNSNSNDNKNEEMDIGESIRWLAEVVVRSEQTRMETMKEIEKMRVEAEAKRGEMELKRTEIIANTQLEIARIFASVNKGVDSSLRIGRS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02098 346 FunFam Trihelix transcription factor ASIL2 45 110 - -
Spst5g02098 346 Coils Coil 294 314 - -
Spst5g02098 346 Gene3D - 45 110 - -
Spst5g02098 346 MobiDBLite consensus disorder prediction 238 252 - -
Spst5g02098 346 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 33 332 IPR044823 -
Spst5g02098 346 MobiDBLite consensus disorder prediction 24 41 - -
Spst5g02098 346 MobiDBLite consensus disorder prediction 207 270 - -
Spst5g02098 346 Pfam Myb/SANT-like DNA-binding domain 42 129 IPR044822 -
Spst5g02098 346 MobiDBLite consensus disorder prediction 1 41 - -
Spst5g02098 346 MobiDBLite consensus disorder prediction 211 225 - -
Spst5g02098 346 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02098 Spst-Chr5 56420221 56422266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02098 5 329 Trihelix Transcription Factor Family AT3G14180 25.849 8.00e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst5g02098 Myb_DNA-bind_4 2.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02098 - - gmx:100799917 467.618