Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02097 ATGGACACCAAGCTGTTAACAATCCGCACCCTCGTCTCCTCCCTCTCTTCCTCCTCCGGTCAAATCCGCCTCGTCGCCCTCCGTCACCTCCGCCGCACCTCCAACGAGGACCCCGCCTCCCGCTCCCTCATCTCCGCCGCGGGAGCAATCCCTCTCCTCGCTGACGCCCTCTATTCCCCCCTCCACCCCATCCAAGACCACGCCGCCGCCACCCTCCTCAACCTCTCCATCTCCGACCGCCAACCCTTCCTCTCCTCCCCCACCCTCCTCCCCGCCATCGCCCACCTCCTTTCCCGCCATGCAACCTCCTCCGCCGCCACCGCCGTCCAATCCGCCGCCGCCACCCTCCACAGCCTCCTCGTCGTGGTAGCCGAGTTCCGCCACACCGTGGGTGCTAACCCGGACCTCCTCCATGCCCTCATCAGCATAATCAGCCATCCTGACTCGCTAACGAGGTCCATAAAGGACGCTCTGAAAGCTTCCTTTGGAGTTGCACTGCACCCGCCGAATCGGATTACATTAATCCGGATAGGTGCAGTTCCTGTCCTCTTTGCGCTGATCGCCAAAGACAAGGACGGGAAGAGAAAAGTTGGCATAATCGAGGATGCCACTGCGGTAATCACGCAAATTGCGGCGTGCGAGGAGAGCGAGGACGCATTCCTCAAGGTTTCGGGGATTTCTAAGTTGGCGATGATGTTGTGTTCGGAAAGTGGAAGCTGTAGTTTGAGGACAAAGGAGAATGCTGTTGCAGCGTTGTTGAATTTGATGAGATATGGGAGTGAGCGAGTGGTTGGGGAGGTTAGGAGCAATGTTGGGGCGTTGGATGGGATCGCGTATGTGCAGGAACACGGTAGCCCCAAAGGGAAGAGCAAAGCCATGGTGTTCTTCAAGCTTTTGCTTGATGGTGGAAGCAGTGGTGATATTGTTCAAGATTTGTACCCGGTTGACTCTGAATCGGGTTCAAGTTGCAGCAATTCTAAGTAG 984 0.5742 MDTKLLTIRTLVSSLSSSSGQIRLVALRHLRRTSNEDPASRSLISAAGAIPLLADALYSPLHPIQDHAAATLLNLSISDRQPFLSSPTLLPAIAHLLSRHATSSAATAVQSAAATLHSLLVVVAEFRHTVGANPDLLHALISIISHPDSLTRSIKDALKASFGVALHPPNRITLIRIGAVPVLFALIAKDKDGKRKVGIIEDATAVITQIAACEESEDAFLKVSGISKLAMMLCSESGSCSLRTKENAVAALLNLMRYGSERVVGEVRSNVGALDGIAYVQEHGSPKGKSKAMVFFKLLLDGGSSGDIVQDLYPVDSESGSSCSNSK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02097 327 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 225 IPR000225 GO:0005515
Spst5g02097 327 PANTHER U BOX DOMAIN-CONTAINING 8 297 - -
Spst5g02097 327 Gene3D - 6 297 IPR011989 -
Spst5g02097 327 SUPERFAMILY ARM repeat 7 300 IPR016024 -
Spst5g02097 327 SMART arm_5 213 257 IPR000225 GO:0005515
Spst5g02097 327 SMART arm_5 37 77 IPR000225 GO:0005515
Spst5g02097 327 SMART arm_5 167 212 IPR000225 GO:0005515
Spst5g02097 327 FunFam ARM repeat superfamily protein 2 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02097 Spst-Chr5 56416046 56417029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02097 8 299 U-box Gene Family AT2G23140 29.932 1.51e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02097 - - gmx:100803111 469.544