Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02091 ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCCAACCCCTTCCCTGCACCAAGGCCAACCCATTTCAGATAACCACACTCCCAACCTTCCTCTGCCTTCTTCAGCCGCTCTCAGTGTTGGCTTTGGCATTTTTCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAAACAATGAGATTCAAGAGTGTGGTGGTGGTGGTGGTGGCGGTGGCAACACCAACACTAACACCACCACCAACTATTGGAACCTCAAGATGTTCCCAGAAGTGAATCCTCCAAAGAAGGGTGTGATCAACATGGATGATGATGATGACGACGACGAAGGGAGACACCGTCACCATAAGGGTGTGATGGAGAGTGAGGAAAACGGGATTTATGGACCTGACTTCAGAGTGTGTCAAGATTGTGGCAATAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATATGATTGCAACACTCACGTGAAGAGCACGTGGATCCCCTCAATTCGCCGCCGGGAGCGGGAGATGGCGGTGGTTTCCGCCGGTGGTGGTAGTAGTAGTAAGAGGCCAAGGGCTTTAGTGGGGTCATCACAAAATGCCACTGCCACTTCTCATAGTTCCAACTCTAATGCTACAACCTCCAAGAGCTTAGCTACAATCTCTTCTCACCAAGATGCTGGGTTCAAACAGTCTTTACCAGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCCACGGTGCAGATTAGTGGCCATGTGTTCAAGGGGTTTCTCTATGACCATGGAGTTGATGGGAAATTTGCAAACTCAGTGCCCTGTGTTTCTGAACTGCAACTTGGAAACAATTGCATTGGGAAGAACAGGGAATGTTCTTCTGCAATTGGAGTTCCAAATAACACTGCATTCCCTGCTTCTGCCAGTTGA 996 0.493 MSMLGLRDLVLIAPTPSLHQGQPISDNHTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQNNEIQECGGGGGGGGNTNTNTTTNYWNLKMFPEVNPPKKGVINMDDDDDDDEGRHRHHKGVMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSIRRREREMAVVSAGGGSSSKRPRALVGSSQNATATSHSSNSNATTSKSLATISSHQDAGFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVDGKFANSVPCVSELQLGNNCIGKNRECSSAIGVPNNTAFPASAS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02091 331 MobiDBLite consensus disorder prediction 198 223 - -
Spst5g02091 331 NCBIfam putative zinc finger domain, LRP1 type 137 179 IPR006510 -
Spst5g02091 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 113 318 IPR007818 GO:0003700|GO:0006355
Spst5g02091 331 NCBIfam LRP1 C-terminal domain 240 287 IPR006511 -
Spst5g02091 331 MobiDBLite consensus disorder prediction 184 223 - -
Spst5g02091 331 Pfam Domain of unknown function (DUF702) 137 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02091 Spst-Chr5 56391795 56393095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02091 138 326 C2H2 Transcription Factor Family AT5G12330 51.244 3.57e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst5g02091 DUF702 1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02091 - - vun:114175485 530.02