Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02086 ATGGAGGAATATCATTGCTATGCATACCCACAAATTACTGTTTCCAATGTTATACCAGAAATTCCACCTAATTCCGATGGAGAACAAGAATTCAACGTCAAATTTGAACGCTCGAACGGTTGTTGCAAAGTTTTACGCTACAACTTTCAAAAAGTACCGAAGGAAGAAATAATGGATAAAACATCCATCTTGTCTTGGCTTACTTTCATGGATGTGCCTAGCGCGGCTCAGAGTCTTGTGTTGGAAGATGTGATGCAATGCGCGCGTGAGATGCTTGATGACCCGGCTAACACACGCAAACAAGTTCTGCATATGTGCGTGGATCTGACTATCATTCGTGAAAATGAAGATGAAACGAATGATAGCAACGATGACACCACCACTACTGAAGAGGATGAGGATGAAAATGATGATATAAACGAAGAAAATGACGAAGATTATGGGTTGGTACCTGCGGCTAAGACAGTGATCGAAGGTTTGAAGATCGTGAAAGAAAATGAGAAGAAAAGGTGTGCGATTTGTTTTGAGGATTTTGTTGTTGGTGTTCGCATGGCTTGTATGCACATGTTTCACAAAAACTGTATCAGCGAGTGGTTGAAAATAGGTCATTCATGTCCTTTGTGTCGTTTTCAAGTACCTACTACTTCCAGCGATTGA 657 0.4094 MEEYHCYAYPQITVSNVIPEIPPNSDGEQEFNVKFERSNGCCKVLRYNFQKVPKEEIMDKTSILSWLTFMDVPSAAQSLVLEDVMQCAREMLDDPANTRKQVLHMCVDLTIIRENEDETNDSNDDTTTTEEDEDENDDINEENDEDYGLVPAAKTVIEGLKIVKENEKKRCAICFEDFVVGVRMACMHMFHKNCISEWLKIGHSCPLCRFQVPTTSSD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02086 218 ProSiteProfiles Zinc finger RING-type profile. 171 209 IPR001841 -
Spst5g02086 218 SMART ring_2 171 208 IPR001841 -
Spst5g02086 218 Pfam Ring finger domain 170 209 IPR001841 -
Spst5g02086 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 217 IPR013083 -
Spst5g02086 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 213 - -
Spst5g02086 218 MobiDBLite consensus disorder prediction 118 145 - -
Spst5g02086 218 MobiDBLite consensus disorder prediction 116 145 - -
Spst5g02086 218 SUPERFAMILY RING/U-box 170 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02086 Spst-Chr5 56309337 56309993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02086 83 212 C3H Transcription Factor Family AT1G68180 31.884 3.14e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02086 - - pvu:PHAVU_005G024400g 180.644