LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g02083	ATGCAAACCCCAACCTTTCTCACATACTTGCACAGCTTCCATTCACCAACCATGGAAGCTAGTACTGGACTTTTTGCTGGTACTCCAAACAGCAATGAGCTTGTGGCCATTCAAGGACATGATGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGCGTTACGGTGGAAGGAGACTTATTTGTTGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGACCATGCTATGAGTATGAGAGAAGGGAAGGGAATCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGATATTGAACATGAATTCAAACATGAAGAGATGCAGAAAGGGAACATGATCCATGGAGATGATGGCAATTCTAAATCAAAAGCGGTTAATGGGGAGCTGCTTTCCACCAGTTTGGGAGAACCTGGTGCAAAGTTGGATGACAAGGAGGAAATAGATGAGTGGAGGTTGCACCAAGGGAATGTATGGCCTGAAACTGATTCCTCAGTTGATCCTGAAAAGGCCATGAAAGAGCCACTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGACTTCTCCTTCTATTACTCTTCTTTCAGTACAGAATCTTCCACCCAGTTCCCGATGCAGTTGGACTATGGTTCATATCTGTGACATGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTCCCCATTGATCGTGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACCGGAGAACAAGCCCAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTTGTGACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTTACCTTTGAAGCTCTTCAAGAAACAGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAAAAATTCTCCGTAGAACCAAGAGCACCAGAAAAGTACTTCTCCGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACCTATGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGAATAAATGCACTAGTGGCTAAATCCATGCGAGTTCCCCCAGAAGGGTGGACCATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAACGACCATCCAAGTATGATACAAGTCCTTCTTCCTCACAATGTAGGTAATGAACTTCCTTGTCTTCTCTACACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACAGCAAAACTGGCGCCATCAACGCCTTGCTTCGCGTATCAGCAGTGTTGAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGATTTGACAGCCTAGATAGAAATGATCGTTATGCCAACAAAAACACCGTTCTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAAGGACCTGTTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAAGCCTTAACTGGCTTTGACTCACCAACGTCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCGTAACAGCAGCAACAGATGAGGAAAAGGAGCTATTGAAGTCACAGATGAATGATGAAAATAAATTTGGGAAGTCCACACTCTTCATGAACTCTTCATTAACAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGTCCTGCTTAAAGAAGCCATTCATGTAATGAGTTCTAGATATGAAGACAGAACTCTCTGGGGAGATGAGGTGGGTTTAAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCATGGTTGGAGGTCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCCATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATTCTATTCAGCCGCCATTGCCCTCTTCTGTATGGCCTCAATGGTGGAAGACTCAAGGGACTCCAACGAATTGCCTATGTTAATAGCACTGTCTACCCCTTCAGCTCAATACCTCTCCTAATATATTGTATCATTCCTGCTATATGCTTGCTCACAGATAAATTCATCACACCATCGGTAGGCACTTTTGCAAGTCTAATCTTCATCTCATTGTTCATCTCTATCTTTGCCTCGGCCATTCTTGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGCAGTGTGTCTGCAAACCTCTTTGCGGTTATGCAAGGCATTATGGGAGCCCTGCCACTGGGTAGAGTCAACACAAACTTCAGCATTGTCTCAAAGGCACCAGATGATGTAGAGTTTCGTGAACTCTATGCCATTAGATGGACTGCACTTCTAATACCCCCAACCACCATCATCATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATTCCATAAACAGTGGTGAACATTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTCTCTTTATGGGTTATTGTCCATATGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCCATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTATTGAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA	2967	0.4375	MQTPTFLTYLHSFHSPTMEASTGLFAGTPNSNELVAIQGHDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGNQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMQKGNMIHGDDGNSKSKAVNGELLSTSLGEPGAKLDDKEEIDEWRLHQGNVWPETDSSVDPEKAMKEPLSRKVAIPSGKLSPYRMMVVARLLLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPNDHPSMIQVLLPHNVGNELPCLLYTSREKRPAFQHHSKTGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPVYVGSACIFRRKALTGFDSPTSSKRPSMVQVHSKQDENGEEASVTAATDEEKELLKSQMNDENKFGKSTLFMNSSLTEEGGVDPSSSQEVLLKEAIHVMSSRYEDRTLWGDEVGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSRHCPLLYGLNGGRLKGLQRIAYVNSTVYPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLIFISLFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVMQGIMGALPLGRVNTNFSIVSKAPDDVEFRELYAIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHMYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC	988

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g02083	988	CDD	mRING-HC-C4C4_CesA	52	102	-	-
	Spst5g02083	988	MobiDBLite	consensus disorder prediction	582	612	-	-
	Spst5g02083	988	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	295	786	IPR029044	-
	Spst5g02083	988	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	36	127	IPR013083	-
	Spst5g02083	988	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	284	391	IPR029044	-
	Spst5g02083	988	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	448	584	IPR029044	-
	Spst5g02083	988	ProSiteProfiles	Zinc finger RING-type profile.	54	100	IPR001841	-
	Spst5g02083	988	FunFam	Cellulose synthase	36	127	-	-
	Spst5g02083	988	Coils	Coil	393	413	-	-
	Spst5g02083	988	Pfam	Cellulose synthase	603	982	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Spst5g02083	988	Pfam	Cellulose synthase	295	593	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Spst5g02083	988	Pfam	Zinc-binding RING-finger	44	121	IPR027934	-
	Spst5g02083	988	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	199	955	-	-
	Spst5g02083	988	MobiDBLite	consensus disorder prediction	593	612	-	-
	Spst5g02083	988	SUPERFAMILY	RING/U-box	39	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g02083	Spst-Chr5	56288351	56293547	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst5g02083	18	988	Cell Wall Biosynthesis	AT5G17420	63.434	0.0	1340

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g02083	K10999		-	gmx:100777270	1793.09