Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02046 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTCTATTCTCACCACTCTTCTTTCACTTCCTACCCTCTTTCATACTCAAACACCACCACCTTCTCTACTGTTCAATCTGAAACCTCTTCCATCTCTTGTGCAGCCCCTCCTTCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAGTCTCATAAAGCAGAGGGAGAATGAACCCTCCAACGGTGGTGGCGAAGCTGAAGAGAAAAGGGACATAGATGAGACCCTTTTGACTGAAGATGGTGTTGATGAAACTGTGGCAGTAGCACTGCGCATAGGGCTTCCTAGCGTGGCTGCTTCTGATCTTCTGGGATCCAGGAAGATTTCAGCTTGTGCACAGATGTGTCAGAAAGGGGAAGTGAGTGTGATTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCGGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCTGATTCTCTAAAAGGAACACAACCATCAACAATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACCCTTCAAACACACTACAAGAGAAAACATGGTGTTAAACCCTACATGTGCAGAAAATGTGACAAACCATTTGCAGTGAAGGGTGATTGGAGGACACATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGGTCTGATTTCAAACACAAAAGATCTCTAAAAGATCACATAAAGGCCTTTGGCCATGGCCACGGAGCTGTTGACATTGACTGCATGCAGGAAGATGAAGGTGCCTCAGAAATTGAACATGATGGGGATAGCTCAATGTGA 984 0.4492 MTDPHSNLYAGTFNFMPLYSHHSSFTSYPLSYSNTTTFSTVQSETSSISCAAPPSPPLREALPLISLIKQRENEPSNGGGEAEEKRDIDETLLTEDGVDETVAVALRIGLPSVAASDLLGSRKISACAQMCQKGEVSVISGHPLDRLNKVRYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPSTMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYMCRKCDKPFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGHGHGAVDIDCMQEDEGASEIEHDGDSSM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02046 327 SUPERFAMILY beta-beta-alpha zinc fingers 159 189 IPR036236 -
Spst5g02046 327 SMART c2h2final6 167 189 IPR013087 -
Spst5g02046 327 SMART c2h2final6 251 271 IPR013087 -
Spst5g02046 327 SMART c2h2final6 277 300 IPR013087 -
Spst5g02046 327 SUPERFAMILY beta-beta-alpha zinc fingers 235 271 IPR036236 -
Spst5g02046 327 Gene3D Classic Zinc Finger 166 189 - -
Spst5g02046 327 FunFam Zinc finger protein WIP2 220 302 - -
Spst5g02046 327 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Spst5g02046 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Spst5g02046 327 Gene3D Classic Zinc Finger 230 304 - -
Spst5g02046 327 Pfam Zinc finger, C2H2 type 168 186 IPR013087 -
Spst5g02046 327 PANTHER ZINC FINGER PROTEIN WIP2 24 320 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02046 Spst-Chr5 55888444 55890384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02046 1 320 C2H2 Transcription Factor Family AT3G57670 50.794 1.05e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g02046 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02046 - - vra:106761045 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02046 5 55888444 55890384 Spst5g02046 5 55888444 55890384 ECH