Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02041 ATGTCCTACAGAATTTGTTTTAAAATAATTGTCCGTCTCAGGGTTTGCAAGTTCTATGCCCGTGGAGCGTGTTTGAAAGGGGATCGATGTGATTTTGTTCATGAGAGGAAGGATGGTGTAACTTGTAATATTTGTAGCTATTATCAAAAAGGATTATGTGCTTATGGTAGTAGATGCAGGTATAAGCATGTTAAAGCTTCAGAAGCTTCATCTTCAGCAAATGGACGTCATTCTCCTGTTTCAGATTCTGTGGTAAATCATACCCCCAGTTGGGTTCCGAAGGCTGTGAAGTCATCTTCGTCAGACAAGTGCGCAAGGAGTTCACAATACAAGAATCTGGTCTCTCCTGGAAATGATGTTGGTCAATCCAGTACTAGTAGTGCTGCACCATCTGAACTTCTGTTTTGTTCATTTGCAGCTTCCAACTGCCCCCGTGGAAATAAATGTTCTCTTGTTCATGGAAATCGATGTTTCTACTGTAGAAAATTTTGCTTACATCCTACTGATAGAGAGGAAAGAGAAATTCATTTGGCAACTTGTGAGAAAAAGGAAAAATATCTTCAGGCTTTGAAAGTTAGTCAAGATGTCGAATGCAATGTTTGTTTGGAGCTTGTTCTTTCCAAGCCTAAACCATCTGATTGTAAGTTTGGGCTGCTTCCTGAATGTGACCATGCTTTTTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACATCTGAAATGGACATCAGTGATAATGGCACTGCTAATACAGTGAGGACATGTCCTGTTTGTCGCAAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTACTCTACTAAGGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAAACTAATTGATTGCAAGCATTTTGACTATGGAAATGGGAATTGTCCATTTGGGGCTAGTTGCTTTTACAAGCTTATATTTGTTTCTTGTTTGACCTTTAATAATTATGGTATCTGTTGCTTTCAGCATACTGTGAAGCCTGGCTCATACACATGGATACATCGTAGGCCACCACCACCACCGCGGAGACAAAACAATTTTAATATGTATGATATGTTGGACATACTCAACGATGTTGATTTAACAAGTGCGGAATATTTTTCCATCGTGAGGCACCCGGAGTTTTTTGATGATATGATGGATATATCTGATACGCTTGGTGGAGAATTAGGTCCATGTTTGGGCCCTTTTGATTCTGATGAAGAGGGAGTGGATATTTTTCAGATGGCTGCATTGTCCGAAGCACTTGATGTGGATGATTTTGGTCCTGAAGTTTTTGATGATGAAGAGTTCAACCCAATGGATGCTGCCTTGTTATCAATGATGATGCATTCTATAGTATAG 1377 0.3958 MSYRICFKIIVRLRVCKFYARGACLKGDRCDFVHERKDGVTCNICSYYQKGLCAYGSRCRYKHVKASEASSSANGRHSPVSDSVVNHTPSWVPKAVKSSSSDKCARSSQYKNLVSPGNDVGQSSTSSAAPSELLFCSFAASNCPRGNKCSLVHGNRCFYCRKFCLHPTDREEREIHLATCEKKEKYLQALKVSQDVECNVCLELVLSKPKPSDCKFGLLPECDHAFCLSCIRNWRNSAPTSEMDISDNGTANTVRTCPVCRKLSYFVIPSGIWYSTKEEKQEIIDNYKANCKLIDCKHFDYGNGNCPFGASCFYKLIFVSCLTFNNYGICCFQHTVKPGSYTWIHRRPPPPPRRQNNFNMYDMLDILNDVDLTSAEYFSIVRHPEFFDDMMDISDTLGGELGPCLGPFDSDEEGVDIFQMAALSEALDVDDFGPEVFDDEEFNPMDAALLSMMMHSIV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02041 458 ProSitePatterns Zinc finger RING-type signature. 222 231 IPR017907 -
Spst5g02041 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 266 IPR013083 -
Spst5g02041 458 SUPERFAMILY RING/U-box 187 267 - -
Spst5g02041 458 Pfam CCCH-type zinc finger 44 63 IPR041367 -
Spst5g02041 458 SUPERFAMILY CCCH zinc finger 13 35 IPR036855 GO:0046872
Spst5g02041 458 SMART ring_2 198 260 IPR001841 -
Spst5g02041 458 ProSiteProfiles Zinc finger RING-type profile. 198 261 IPR001841 -
Spst5g02041 458 ProSiteProfiles Zinc finger C3H1-type profile. 290 315 IPR000571 GO:0046872
Spst5g02041 458 Gene3D - 12 78 - -
Spst5g02041 458 Pfam Zinc finger, C3HC4 type (RING finger) 198 260 IPR018957 GO:0046872
Spst5g02041 458 ProSiteProfiles Zinc finger C3H1-type profile. 10 37 IPR000571 GO:0046872
Spst5g02041 458 PANTHER MAKORIN-RELATED 15 357 IPR045072 GO:0000209|GO:0061630
Spst5g02041 458 CDD RING-HC_MKRN 196 261 - -
Spst5g02041 458 ProSiteProfiles Zinc finger C3H1-type profile. 44 66 IPR000571 GO:0046872
Spst5g02041 458 SMART c3hfinal6 131 155 IPR000571 GO:0046872
Spst5g02041 458 SMART c3hfinal6 290 318 IPR000571 GO:0046872
Spst5g02041 458 SMART c3hfinal6 41 65 IPR000571 GO:0046872
Spst5g02041 458 SMART c3hfinal6 12 36 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02041 Spst-Chr5 55867860 55871661 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst5g02041 zf-C3HC4 3.7e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02041 K15687 - gmx:100788886 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g02041 5 55867860 55871661 Spst5g02041 5 55867860 55871661 ECH