Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02040 ATGGGAGATTTCTATGGTCGTGACTGGCAATTAATCATTCCTGGATGTTCTAACGATGTTCATTTCTATATAATTTCTTGCTTGTTTTCTAAATCTTATAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATTTTCGCATGACTGGAAAGATCCTCCAAATAATATATGCACATATTACCAGAAGGGAGCCTGTGCTTATGGTAGTCGCTGCAGATATGATCACATCAAAGTTTCTCAAGTACATTCTTCCGTTTCATCTTCTTCAGTAATTGAACACCAAACGCCGGTTTCAGATACTGTTGCTTTCGGAAATAATAGAACCACTTCAAATGGTGCGGGTACAGCTGCAGACTTTTCTCTTTCCAGTAGTACTTACATTCTTCCTAGTGAACCTGTTTGGAATCAAGAACTGGCTTGGAATCACGAACTGGTTTGGAATCCAGAATTTGAGTATCACGAAATTTTTGGGGAAGACAATGTTGGTCAATCCATAATCACTTCACCTTCTGAGCTTTCAATATGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAAAAATGTCCTCATATTCATGGGGATCTATGTCCCACCTGTGGAAAACTTTGCCTGCATCCTTTCCGACCTGAGGAAAGAGAAGAACATATGAAGAGTTGTAAAAATAAACATAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGCGTATGCCTGGAGCGTGTTCTGTCAAAGTCTACACCAGCCGAACGGAAGTTTGGGCTGCTATCTGAATGTGATCATCCATTTTGCATATCCTGTATTCGGAATTGGCGTAGTAGTAACCCAACGTTGGGGATGGATGTTAATAGCACATTGAGGGCTTGTCCTATTTGCCGTAAGCTATCATACTTTGTCATTCCAAGTGTCATTTGGTACACGACAATTGAAGAAAAACAAGAAATCATTGACAACTACAAGGCAAAGCTCAAGTCAATTGATTGCAAGCACTTCGACTTTGGCGATGGTAACTGTCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTATGGAGCAGGTAGTATTGCGTCATCTAGGGGCTGCAGATGGAAATACCGTTATTGCAAAAGACATCAGGTTATCGGATTTCCTCTCTAACATGCATTTAAGATGA 1200 0.4108 MGDFYGRDWQLIIPGCSNDVHFYIISCLFSKSYRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGACAYGSRCRYDHIKVSQVHSSVSSSSVIEHQTPVSDTVAFGNNRTTSNGAGTAADFSLSSSTYILPSEPVWNQELAWNHELVWNPEFEYHEIFGEDNVGQSIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKLCLHPFRPEEREEHMKSCKNKHKHLEALKRSQEIECSVCLERVLSKSTPAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYTTIEEKQEIIDNYKAKLKSIDCKHFDFGDGNCPFGTSCFYKHAYRDGRMEQVVLRHLGAADGNTVIAKDIRLSDFLSNMHLR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02040 399 ProSiteProfiles Zinc finger C3H1-type profile. 31 58 IPR000571 GO:0046872
Spst5g02040 399 ProSiteProfiles Zinc finger C3H1-type profile. 177 204 IPR000571 GO:0046872
Spst5g02040 399 SUPERFAMILY RING/U-box 235 310 - -
Spst5g02040 399 SMART ring_2 246 303 IPR001841 -
Spst5g02040 399 Gene3D - 63 117 - -
Spst5g02040 399 ProSiteProfiles Zinc finger RING-type profile. 246 304 IPR001841 -
Spst5g02040 399 SUPERFAMILY CCCH zinc finger 62 83 IPR036855 GO:0046872
Spst5g02040 399 Pfam RNA-binding, Nab2-type zinc finger 338 360 - -
Spst5g02040 399 Pfam RNA-binding, Nab2-type zinc finger 182 201 - -
Spst5g02040 399 SMART c3hfinal6 32 57 IPR000571 GO:0046872
Spst5g02040 399 SMART c3hfinal6 178 203 IPR000571 GO:0046872
Spst5g02040 399 SMART c3hfinal6 333 361 IPR000571 GO:0046872
Spst5g02040 399 SMART c3hfinal6 60 85 IPR000571 GO:0046872
Spst5g02040 399 Coils Coil 320 340 - -
Spst5g02040 399 ProSiteProfiles Zinc finger C3H1-type profile. 59 86 IPR000571 GO:0046872
Spst5g02040 399 Pfam CCCH-type zinc finger 36 56 IPR041367 -
Spst5g02040 399 Pfam CCCH-type zinc finger 64 83 IPR041367 -
Spst5g02040 399 Pfam Zinc finger, C3HC4 type (RING finger) 246 303 IPR018957 GO:0046872
Spst5g02040 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 341 IPR013083 -
Spst5g02040 399 ProSiteProfiles Zinc finger C3H1-type profile. 333 362 IPR000571 GO:0046872
Spst5g02040 399 CDD RING-HC_MKRN 244 304 - -
Spst5g02040 399 ProSitePatterns Zinc finger RING-type signature. 270 279 IPR017907 -
Spst5g02040 399 SUPERFAMILY CCCH zinc finger 33 56 IPR036855 GO:0046872
Spst5g02040 399 PANTHER MAKORIN-RELATED 35 381 IPR045072 GO:0000209|GO:0061630
Spst5g02040 399 Gene3D - 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02040 Spst-Chr5 55861605 55863933 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst5g02040 zf-C3HC4 2.5e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02040 K15687 - gmx:100787817 676.781