Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02028 ATGGATGAAGAAACAAGGAAGGGCGAAATCAAAATAGACGTTGGTGAAGGCTCCATCCTGGCCGTTGGATGGGAAACGGCTCCTCATACATACGCGCTCCGATACTATTTTCAGGGGCTTTATTCATCTAAGTCACAGCCCACTAAAAGCCCAGAACCAGAAATCTCCACAAAAAGCAGCGTTTTCCTTCGAATCCGTGTGAGTGAAGTGATTAGGGTTTTTGGAGTCCAACACTCTTCTCTGCAGCTGTTGCCGTCATCTCCATTCACCATGGCTGAACAAACCGAGAAGGCTTTTCTGAAGCAACCAAAGGTGTTCCTCAGCTCGAAGAAAACTGGAAAGGGGAAGAGACCTGGTAAAGGTGGAAACCGCTTTTGGAAATCGATTGGACTTGGATTCAAGACTCCCAGGGAAGCCATCGAAGGAACCTACATTGATAAGAAGTGCCCCTTCACTGGCAACGTCTCCATCCGTGGTCGTATCTTAGCTGGAACATGTCACAGTGCTAAGATGAATAGGACTATTATTGTCAGGAGAAATTATCTTCATTTTATTAAGAAGTACCAGAGGTACGAGAAGCGGCATTCAAATATTGCTGCCCATATATCACCTTGCTTCCGTGTGAAGGAAGGAGATCATGTAATCATCGGTCAATGCAGGCCTCTCTCTAAGACAGTGAGGTTTAATGTATTGAAAGTCATCCCTGCCGGATCTTCAAGCGGTGCAAAGAAGGCATTCACTGGGATGATTTTGTCATACGCTGTGGTTTTGTAA 774 0.4561 MDEETRKGEIKIDVGEGSILAVGWETAPHTYALRYYFQGLYSSKSQPTKSPEPEISTKSSVFLRIRVSEVIRVFGVQHSSLQLLPSSPFTMAEQTEKAFLKQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGMILSYAVVL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02028 257 FunFam 40S ribosomal protein S11 91 248 - -
Spst5g02028 257 ProSitePatterns Ribosomal protein S17 signature. 211 223 IPR019979 GO:0003735|GO:0005840|GO:0006412
Spst5g02028 257 Pfam Ribosomal protein S17 164 232 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst5g02028 257 PRINTS Ribosomal protein S17 family signature 178 201 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst5g02028 257 PRINTS Ribosomal protein S17 family signature 221 228 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst5g02028 257 PRINTS Ribosomal protein S17 family signature 211 221 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst5g02028 257 Pfam Ribosomal_S17 N-terminal 94 162 IPR032440 -
Spst5g02028 257 Gene3D - 81 248 - -
Spst5g02028 257 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 100 241 IPR000266 GO:0003735|GO:0005840|GO:0006412
Spst5g02028 257 SUPERFAMILY Nucleic acid-binding proteins 158 237 IPR012340 -
Spst5g02028 257 NCBIfam 30S ribosomal protein S17 144 233 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02028 Spst-Chr5 55744500 55750814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02028 91 249 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.937 1.43e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02028 K02949 - gmx:100784140 307.375