Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02021 ATGGCATCTAGCTCAATGTCTGCCACTGGCTCATGGAGTGCCAAGGACAACAAAGCCTTTGAAAGGGCTCTAGCTGTATATGACAAGGACACTCCTGACCGTTGGTACAATGTTGCTAAGGCTGTTGGTGGAGGGAAGACCCCAGAGGAGGTGAAGAGGCACTATGAACTCCTCCTCAGGGATGTTAGGCACATTGAATCAGGGCAAGTGCCATTCCCAAATTACAAGCAAAGTGGAGGTTCTGAAGAGGAGAAAAGGCTCAGAAACATGAAGCTCCAGTGA 282 0.4929 MASSSMSATGSWSAKDNKAFERALAVYDKDTPDRWYNVAKAVGGGKTPEEVKRHYELLLRDVRHIESGQVPFPNYKQSGGSEEEKRLRNMKLQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02021 93 CDD SANT 11 59 IPR001005 -
Spst5g02021 93 Gene3D - 2 72 - -
Spst5g02021 93 SMART sant 8 61 IPR001005 -
Spst5g02021 93 MobiDBLite consensus disorder prediction 79 93 - -
Spst5g02021 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 87 IPR044636 GO:0003700
Spst5g02021 93 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Spst5g02021 93 MobiDBLite consensus disorder prediction 69 93 - -
Spst5g02021 93 FunFam Transcription factor SRM1 4 72 - -
Spst5g02021 93 ProSiteProfiles SANT domain profile. 7 63 IPR017884 -
Spst5g02021 93 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
Spst5g02021 93 ProSiteProfiles Myb-like domain profile. 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02021 Spst-Chr5 55688776 55689560 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst5g02021 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02021 - - gmx:100804396 178.718