Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02019 ATGCGAAGCAAGGAACAGAACATTCGGAGTAGATCCGCGAGGCGGCGGCCGGAGATATCGCCGCCGGCGAGGATGCAGTTTGATGAGAGAAAGGTCATTTATTTTTTTCCCGCGGAATGCGGTTCTAATCAAGCAATCCAACTGTTGCACTCTTTCACTTCAACCCTCTCTTCCAAACCAAACCCCTTTTCCCATTTTCAAATTCTCTCTCTCATGTCCGCGGCGTCTCCGCCACCCTCCGCCGCCGCAACTACCACCGGCGTAGGTCTCGGCTACGGCATTGCTATCGCCGTCAGCATCCTCGTCCTCATCTCCTCCATCATGCTAGCCTCCTACGCCTGCGTCCGCATCAAATCCAACTCTCGCGGCACCCTCAACAACACTTACTACGACCAAACGGAACCAAATAACACCATTCGGGACTCCGCTGGGCCCAGGCCCATGGTCCTAGGCCTGGAAAAGCCTGTCATCGAGGCCTACCCGAAGATCGTGGTCGGCGAGAGCGGGCGTCTCCCCAGACCCGACGATCGCGGCCTCTGCGAGTACCTTCCCAAGGAGGCAGTACGCTGCGTTCCGAGCTGCCACCACTGTTTCCACGCGGACTCCGTGGACGTGTGGCTGCGGATGAGTGCCACGTGTCCACTCTGCCGGAACTCACCGTCACCGTCGCCGGCACCAACACCGCTGTCGGAAATCGTTCCGTTGCCATTCCACGCCAGGTGA 723 0.5864 MRSKEQNIRSRSARRRPEISPPARMQFDERKVIYFFPAECGSNQAIQLLHSFTSTLSSKPNPFSHFQILSLMSAASPPPSAAATTTGVGLGYGIAIAVSILVLISSIMLASYACVRIKSNSRGTLNNTYYDQTEPNNTIRDSAGPRPMVLGLEKPVIEAYPKIVVGESGRLPRPDDRGLCEYLPKEAVRCVPSCHHCFHADSVDVWLRMSATCPLCRNSPSPSPAPTPLSEIVPLPFHAR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02019 240 SUPERFAMILY RING/U-box 180 224 - -
Spst5g02019 240 PANTHER RING-H2 FINGER PROTEIN ATL67 78 236 IPR044289 GO:0016567|GO:0016740
Spst5g02019 240 MobiDBLite consensus disorder prediction 1 22 - -
Spst5g02019 240 Pfam Ring finger domain 180 217 IPR001841 -
Spst5g02019 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 222 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02019 Spst-Chr5 55668977 55671950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02019 72 240 C3H Transcription Factor Family AT5G07040 55.747 1.26e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02019 - - vra:106761828 258.84