Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02008 ATGGCTCCCAAGAAGAAGAAACCCAATCCCCAACAACCTTCCAAGTTCGGCATCCACCACTTCTTCGATCGGGCCTCTCAGAAACACCACCACCTTCAACCCCACACCACCACCACCACCACCGCAACCAACGCCACCACCTCCACCAACACCACCACCGACAATCCACCACAAGAACCCAACGAAGTGTCTCCGCAGACACGCTTCAAATTCTCACCTGGAATGTTGGTGAAGCAGAGCCAGGAGGACGCTGTCAACGAGGTCACCTGGAAAATATCTCCCGTGAATGAGAGGCTCCAGGCAGTTTCCAAACATACGCCTGAAGTGCTCAAATCCTTGGCTGCCTCTTCCAAAATGAACTTGTCGCCAATTCGCAATGACAGCGGCAAGGAGGCAAATTTTCTCTTTGTTTCTTTAGTTTTGACTTTTCTGGATAAGGTTGCTTCGCCAACTCCTAAGGTGCCGTTGAGCTTCAAAAGGTTAAACTCGACCCGTGATGTGAGTGGACAGAGTCCCTTCAGAACTCCGCCGTCTTTGTCCTATCGCCCTGACAAGGTGCAGCGTGTCAAGGATGTTGAACACAAGGGACAGTGTGACCAACCTTTACTACGACAGAACAAAAAGGCATTGCTTGAACTCTTAGATCAAGTTGAAGATGCCATTGCTGTTGATGATGCTCCAGTTTGTAATAACAACCCTTCTTCCTTTCAAGTACCTCAAAATCAATTTGCTGGTGAGCTCCCTGTCAAAGTCAAACCTGCAGTAGAAAGGACCAAATCATATTTGCCTAAAGAGAATGCAAACGTCTTCTCCAATTCTAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCCTTTGCTGCTCAATGCTCATACAAGGTGCTGTCTTGTAGTGTAATTGCACCTGGAGATACTGTGCACGTAATCGGTCAATTCGATGAAGGGGGGAATTGTGATATTGATCATGATAAAAACTTTTTGATTGTACACCCAGATATTCTAGTGTCTGGAACACGGGCGTTCAAAGATAGTGTTGGATGTGTTGCTTCCAGTTTTAGTTGCCCGAGGAGAACTGTCTTAGACGAGAGGTTGAAAAACAATGATTACTCAACTGCAGCGTTAGCTGGAACCATGCTGCATCAAATTTTTCAGGCTGGGCTTACAAAAGACCATCCTACAGTAAATTTCATGGAAGATTATGCAGAATTGGTATTACAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAAAATGATGTTCGCAAAACTATGAGAGATGCTATTCCTAGAATATTAAGTTGGATCGGGCAGTTTAAAAATATGGAGCCGCTATGTGAGTCATTGTGTTATGGCTTCAACATGTGCGCTGCATCTTTGGCAAGTCTTCAACTAATGGAATTTTCAGCAGACAATGAAAGAAAAGACCCGAATGTCAAATTTGGATTCGATAATGGGCCAAAGAATGTTGGCATATCTGAGGCAAGCTCCAATCTATTCTCTTTTGTAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGTTTGAAAGGGATGATTGATGCTTCAGTCAGAGTGAAAATTCAATCACAAAAAGACGAGCAGGAGGAAAAAATCATGCCGATAGAATTCAAAACGGGGAAAACACGAAATAGCCAGGCATGTTCTGTTGAACACAGTGCCCAAGGCATTGTGGTTCAAAGATCTGACTTAACTGGGCTTATAATGCGACGGAATGAACTAGCAAGTGATATTCTGAAGGCATTGACTTTTCAACAACTGCCTCCAATGTTACAGAGTCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTGGCATTTATCATAAGGCAAATGGTGGAAGCGCAGAGAGCAGTGGGTTGGGAGAAATTTTTTATTCTCTTACTAATCACATGACATCTTCGCATACTAATTTTCTCGGCCATTGGGATCGTTTGATTGATTTAGAAGCTAAAGAGACTGAGCTTTTAAAGAAAGAGGTGTGGCAATCACATAGTGCAAAGAGTTCAAACAGTAGTGGCCTTTGTTCTATTGTTCTTGATGGCTCACAAGGAATACCTCTTAAGAAATCTGTCAAAGAGAATCAATTCATTTATCGCTTCATTCAAGAAGATTCTTCTTCTTACCTTTCTGAAGTTTCTGATGCGTCTTCTAGTGCCTCATTGAAAAATGATTTAGATTTCACACTTCGAAGTGGAGATCATGTGGTAAAGTTAGAATGTGTTGTGGCAAGGACAATTCCTACAATAGCTGTTGTAGTGAAGAATGTACATAATGGACTCCTAATTACCAAAGAAGAGTCCTCTCAGTCCGCATTGATAGGTGAGGCCCTATCAATAACTGGATCGGCCATTCACCCAAGTCTCATATCATTGGCTTACCGATTCCGTGTTTGGTCAACTCCCGAGGTTGTCTTCGTGACGGTTTCCTTTTCTAAGCGTTTGCGAATTCCGGGGTGTTCTTCCACTGCACATGATCTCATTCAGCAGGTTTGGAGAATTGACAGGGATGAAGCTGTGACTTCCTTTGCAGTTATGAGGTTTAATCTTGTACAACTATTTCTACAAAATGATCAAAGTGCTCATTTGCGGCGGATGATTGTTGATCTTGAGGCTCCTAGATTCGACAGTGGATCTCTACTTAGCCAGGATCCTGCGATATCCTATGTTTGGTCAGAAAAGAGTTTGAATTATGACCAACGTAAAGCAATTCTAAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACTTCCACATTAGTTCATGCTGTGAAAGCTTTGTTGATTAGAGGGACATCCATTTTGCTAACCGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGAATTGATTTTGTACGAATTGGAAGACATGAAATAGTGAATGAGGAGGTCAGAGAACACTGCCTCTCAGCAATGAGTGTACAAGGTGTTGAAGATATCAAAAGAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTGCCAATACAAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACTTTACCAGTGTCCTTGGGCCCTCTAACATTTGCTTCAATGTTTGTTCTTGTTGGGGATCATTATCAACTGCCACCACTTGTCCAGAGTACAGAAGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGACTCTCTGAAGCACATCCACAAGCTATTTTAGCTCTACAGAGTCAGTATCGTATGTGTCAGGACATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCAGTTGAGGTAGCTAATGCAAAACTCGAGTTTTCAGGCTTAAAGTGTGACTTGCCTTGGCTAGAAAATGTTTTGAATCCTCGAAGACCTGTGATATTTATTGATACTGACAAGTTGCCTGCTTTAGAGTCAAGAGATCAGAAGATTGTAAATAACCCTATTGAAGCTCAAATAATTGCTGAGGTTGCAAAGGAATTAGTAAAAAATGGAATCGGAAAAGAACACATTGGCATTATAACTCCATATAATTCCCAGGCAAACGTCATCCGGCAAGCTGCTTGCATGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTATTATCTTTTGTAAGGTCTACCGAAAACCCAACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTGATAATGGTAGGGTCTCGGAGAACTCTATCGAAGGTTCCTCTACTGAAACTTCTTATTAGCAAGGTTGAGGAGCAATCTGGAATTTTAAGTGTGTCTAAGAAGGATCTCTATCGAAAAGGTGAGCTCAAGAGATGTTCCCAACTGAGATGA 3987 0.4196 MAPKKKKPNPQQPSKFGIHHFFDRASQKHHHLQPHTTTTTTATNATTSTNTTTDNPPQEPNEVSPQTRFKFSPGMLVKQSQEDAVNEVTWKISPVNERLQAVSKHTPEVLKSLAASSKMNLSPIRNDSGKEANFLFVSLVLTFLDKVASPTPKVPLSFKRLNSTRDVSGQSPFRTPPSLSYRPDKVQRVKDVEHKGQCDQPLLRQNKKALLELLDQVEDAIAVDDAPVCNNNPSSFQVPQNQFAGELPVKVKPAVERTKSYLPKENANVFSNSNYLVLEVSELRSADSFAAQCSYKVLSCSVIAPGDTVHVIGQFDEGGNCDIDHDKNFLIVHPDILVSGTRAFKDSVGCVASSFSCPRRTVLDERLKNNDYSTAALAGTMLHQIFQAGLTKDHPTVNFMEDYAELVLQKNIESLYACGVNENDVRKTMRDAIPRILSWIGQFKNMEPLCESLCYGFNMCAASLASLQLMEFSADNERKDPNVKFGFDNGPKNVGISEASSNLFSFVIDIEEMVWAPKYGLKGMIDASVRVKIQSQKDEQEEKIMPIEFKTGKTRNSQACSVEHSAQGIVVQRSDLTGLIMRRNELASDILKALTFQQLPPMLQSPSICRGCRHLNVCGIYHKANGGSAESSGLGEIFYSLTNHMTSSHTNFLGHWDRLIDLEAKETELLKKEVWQSHSAKSSNSSGLCSIVLDGSQGIPLKKSVKENQFIYRFIQEDSSSYLSEVSDASSSASLKNDLDFTLRSGDHVVKLECVVARTIPTIAVVVKNVHNGLLITKEESSQSALIGEALSITGSAIHPSLISLAYRFRVWSTPEVVFVTVSFSKRLRIPGCSSTAHDLIQQVWRIDRDEAVTSFAVMRFNLVQLFLQNDQSAHLRRMIVDLEAPRFDSGSLLSQDPAISYVWSEKSLNYDQRKAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEIVNEEVREHCLSAMSVQGVEDIKRRLEQVKVVAVTCLGISSPLLANTRFDVCIMDEAGQTTLPVSLGPLTFASMFVLVGDHYQLPPLVQSTEARENGMGISLFCRLSEAHPQAILALQSQYRMCQDIMDLSNALIYGDRLRCGSVEVANAKLEFSGLKCDLPWLENVLNPRRPVIFIDTDKLPALESRDQKIVNNPIEAQIIAEVAKELVKNGIGKEHIGIITPYNSQANVIRQAACMTSLEIHTIDKYQGRDKDCILLSFVRSTENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLSKVPLLKLLISKVEEQSGILSVSKKDLYRKGELKRCSQLR 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02008 1328 Pfam AAA domain 1086 1285 IPR041679 -
Spst5g02008 1328 FunFam DNA replication helicase 1107 1320 - -
Spst5g02008 1328 CDD SF1_C_Upf1 1109 1302 IPR047187 -
Spst5g02008 1328 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 851 1000 - -
Spst5g02008 1328 PANTHER DNA2/NAM7 HELICASE FAMILY 171 1303 IPR045055 -
Spst5g02008 1328 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1005 1106 - -
Spst5g02008 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1293 IPR027417 -
Spst5g02008 1328 Gene3D - 841 1106 IPR027417 -
Spst5g02008 1328 Gene3D - 1107 1320 IPR027417 -
Spst5g02008 1328 Pfam DNA replication factor Dna2 302 531 IPR014808 -
Spst5g02008 1328 CDD DEXXQc_DNA2 908 1108 IPR026851 GO:0017116
Spst5g02008 1328 MobiDBLite consensus disorder prediction 1 68 - -
Spst5g02008 1328 Pfam AAA domain 1009 1076 IPR041677 GO:0004386
Spst5g02008 1328 Pfam AAA domain 909 1000 IPR041677 GO:0004386
Spst5g02008 1328 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02008 Spst-Chr5 55565094 55582898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02008 1 1050 Core DNA Replication Machinery Family AT1G08840 46.753 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02008 K10742 - gmx:100799415 1869.36