Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02007 ATGATTAACTTCATTCACACAGTCACAGTAATGGCTTCTGCAAGTAACTCCAATCCAAATCCAAATCCAAATCCAAATCCATATCCATGGACCCCAAAGGATTGTTCTGAAGGAATCTGCAGCATCTACTGTCCCCAGTGGTGTTACATAGTGTACTCTCCTCCCCCTCCTTCACTCTTCCTTGGTGGTGATGGGGATGATGATCCTTCAGGCTTTGAGTTCTCTCCTCTCATAGTTGCTGTGATTGGAATATTAGCCAGCACTTTCATCTTGGTCACTTACTACACCATCATCTCAAGGTTCTGCAGGCGCAGCAGTATGCACACCAATGATCCAGCAGAAGATGGGAGCAGTGAACTTGCTCAGGTTTCTTCCTCTTCCAATTCTGGTCTGGATGATGCTCTAATCAAGGCCATCACAGTTTGCAAGTATAACAAAGGTGGAGGGGTGGTGGAGGGTAATGATTGTTCAGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGCTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGTATTGATACTTGGCTCAAATCTCATGCCACTTGCCCCTTGTGCCGTTCCACCATCACCTTTGTTTCTCCAAATCCAGCCATGGAACCACCACCAAGAGTCATTGTTAATGCCTTGGAATACCAGCAAAGAATTAGCCATGTTGTTGTTGTGGTTGTTCAGAGCTCTGAGCAACAGGAGAAGGTGGTAAGTTTTGATTCTCACACTTTGAATGGGAGTGAGGATTGA 774 0.4483 MINFIHTVTVMASASNSNPNPNPNPNPYPWTPKDCSEGICSIYCPQWCYIVYSPPPPSLFLGGDGDDDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRSSMHTNDPAEDGSSELAQVSSSSNSGLDDALIKAITVCKYNKGGGVVEGNDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHATCPLCRSTITFVSPNPAMEPPPRVIVNALEYQQRISHVVVVVVQSSEQQEKVVSFDSHTLNGSED 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02007 257 PANTHER RING-H2 FINGER PROTEIN ATL16 70 236 IPR044600 GO:0016567|GO:0016740
Spst5g02007 257 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Spst5g02007 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 204 IPR013083 -
Spst5g02007 257 SMART ring_2 156 197 IPR001841 -
Spst5g02007 257 CDD RING-H2_EL5-like 155 198 - -
Spst5g02007 257 Pfam Ring finger domain 154 198 IPR001841 -
Spst5g02007 257 SUPERFAMILY RING/U-box 151 207 - -
Spst5g02007 257 FunFam RING-H2 finger protein ATL54 131 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02007 Spst-Chr5 55562392 55563165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g02007 17 201 C3H Transcription Factor Family AT3G03550 51.942 2.36e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02007 - - vun:114168871 399.053