LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g02005	ATGATGGACACCAACAGCTTCTCTCTGTTGGGTCTTCTTCACTTCATCCACTCCTCTGAACTTCTCAGGGACTTCGCCACGCGAGAACTCAACGCCTTTTTATGGCTATCTCTTGTTGTTGTCACCACCCTTTTGCTCAGAAGATTGCTCAGCCTCTTTGGGTTGTGGCGCAGAGCTAGGACCATTCCTGGGCCTCCCTCATCCTCTTTCTCTGGCCACTGCAAGCTCTTTTCCCGGCCTAATTTCACCTTTACTGATGTGTTGTCAGAATCCCATCAAAAGTATGGACCAATTGTTAAGCTGTGGTTAGGTCCTACTCAGCTTTTGGTGTCCGTAAGGGATCCGGCGTTAATCCAAGAGATGCTCACAAAAGCCGAGGATAAGTTGCCTTTTACGGGAAAAGTGTTTCATCTAGCCTTTGGGCAATCGAGCCTCTTTGCCCCTTCCTTTGAAAAGGTGCAAAAGAGAAGGGAATTATTAGCTACAGAATTAAATGAAAGACTGCTGAAGAATGATGATATGATTCCTGTGAAGGTTGCGGATTTTATTTCTGATAAAATAGAAAAAATCAGAAAGAAAGGAGGTATTGATTCCAGGTTGGTTTCTCAGCATATGGCTTTCACTATAATGGGAGCCACGTTCTTTGGAGATGGCTTCTTGGCCTCGTCGAAGGCTGCAATGTATGAGGAACTGTTTATGACAATCGCTAAAGATGCTTGCTTTTGGGCCTCGTATAACGTTACTCCTTTCTGGAGACGTGGATTTTGGAGGTACCAAAGCTTATGCACAAAGTTGAAATGCTTAACTGAAGACATCCTTCAACATTGCAGAAAAGGCTGCAAACTATTTGGCTATACCGACCAAGATGTACATAATGAAAGTTCCAACAAAGGTGGTTCACAATGCTGCTCTGATGGTGAGTTCCAAGATTACTATTTCTTTCGTGATCTTAAGGATTATCAAGATGGTAAAGAAGAACCTTGTGGGAACGTCATGCGCATGATATTTCATGGATGCCAATCTACATCTGCTTTAATCACCAATGTATTGACTAGGCTTGTCATGCATATGGAAATACAGGATAAGGTTTATTCGGAGATTATCATGGTAGGAAGAAACCCATCGAAATATGAGCATGAAGATGTTTATAGGATGCCTTTGTTATTGGCGACAATTTATGAATCTGCACGCCTTCTACCCACTGGTCCCATGCTGCAGAGGTGTTCTTTGAAACATGACTTGAGCTTTGCAACTGGAGTAACCATACCTGCTGGAGCTGTATTGGTTGTACCTGTTGAATTGCTACAGAAGGACGACTTCAGTTGGGGGAGTGATGCAAGTCATTTTAATCCTTACCGATTTCTCTCAACTGTTACAAAGGGATCAGGTTCTGCCGAAGACCTTTCTGTTACAGGATTCAGTTCATTTGTACTAAATGATCCAAATGAAAATGCAGCATTCCTTCCTTTTGGATCCGGTGCACGTGCTTGCATTGGACAGAAATTTATCATCCAACTTGTTGCCTCAGTGTTGGCATCATTGCTCAAAAAATATGAGATACAGCTTAGCTCAGGCTCAGATGATGACAAAAACCCAACCTTGAAGAATAATCTTCCTCAGCGTCATCCCAGTTCACAGATATTATTCGTGAGAAGGGAGCAGTGA	1665	0.4288	MMDTNSFSLLGLLHFIHSSELLRDFATRELNAFLWLSLVVVTTLLLRRLLSLFGLWRRARTIPGPPSSSFSGHCKLFSRPNFTFTDVLSESHQKYGPIVKLWLGPTQLLVSVRDPALIQEMLTKAEDKLPFTGKVFHLAFGQSSLFAPSFEKVQKRRELLATELNERLLKNDDMIPVKVADFISDKIEKIRKKGGIDSRLVSQHMAFTIMGATFFGDGFLASSKAAMYEELFMTIAKDACFWASYNVTPFWRRGFWRYQSLCTKLKCLTEDILQHCRKGCKLFGYTDQDVHNESSNKGGSQCCSDGEFQDYYFFRDLKDYQDGKEEPCGNVMRMIFHGCQSTSALITNVLTRLVMHMEIQDKVYSEIIMVGRNPSKYEHEDVYRMPLLLATIYESARLLPTGPMLQRCSLKHDLSFATGVTIPAGAVLVVPVELLQKDDFSWGSDASHFNPYRFLSTVTKGSGSAEDLSVTGFSSFVLNDPNENAAFLPFGSGARACIGQKFIIQLVASVLASLLKKYEIQLSSGSDDDKNPTLKNNLPQRHPSSQILFVRREQ	554

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst5g02005	554	Pfam	Cytochrome P450	63	534	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst5g02005	554	PRINTS	E-class P450 group I signature	487	497	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst5g02005	554	PRINTS	E-class P450 group I signature	497	520	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst5g02005	554	PRINTS	E-class P450 group I signature	346	372	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst5g02005	554	PRINTS	E-class P450 group I signature	92	111	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst5g02005	554	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	490	499	IPR017972	GO:0005506\|GO:0016705
Spst5g02005	554	PANTHER	CYTOCHROME P450	33	524	-	-
Spst5g02005	554	CDD	cytochrome_P450	96	545	-	-
Spst5g02005	554	Gene3D	Cytochrome P450	56	545	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Spst5g02005	554	SUPERFAMILY	Cytochrome P450	62	552	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Showing 1 to 10 of 10 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g02005	Spst-Chr5	55524621	55529155	Dispersed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst5g02005	32	543	Cytochrome P450	AT1G13710	22.581	2.96e-24	104

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g02005	-		-	vum:124847778	945.651

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst5g02005	5	55524621	55529155	Spst5g02005	5	55524621	55529155	ECH

Showing 1 to 1 of 1 entries

Previous1Next