Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01997 ATGAGGAAGAAGCTCGACACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTATCTAAAGCTCTCGAGTTATTTTTACAAGACCTCTGTGACCGGACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTAAAACATTGTGTACAAAGTTATAATGTCTTCGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCATGGACATGGCCATTCTGAGACTGGACCTGATGACCGTGCCCTTTCAAAAAGAAGGAAAGCTGCTGGTGATGAAGGCAATGAAAGTGATGAAGAGGCTAAGAGGAGTAAGATGCGTGAGTTGGGCCACACTGGCACTCCTGGTAGGGGAAGAGGTCGAGGTAGAGGAAGAGGAAGAGGCCGAGGGGCTCGAACTGTTGAAAGAGACATCTGTCATCAGCAGGTTGAATCTGAGCCTTGCTCCTCTATTCAACAAATTAGCAATGATGTTCCTAACGCAAGTATGCCAATAGATAATGGTGTGCAATCCAAGGAGTTTCCAAAGGAGAACTGTGCAGTTCATGAGGAAAGTGCTCAATCTTTCCGTAACATTGATCTGAATGCTAACATAAATGAAAACGAAGACAAAAATGCAAGCGCGGATGTTGAGGCTTCATTGCCTGAGCCTTCTGCCATGGACATTAAACATGAAGAAATTCCAGGATGGTCCCTATCTGATGTGGACAAGATGACCATTGACACAATGCAACTTGCAAATCTTGGTAGTCGAGTAGAAGAGGACGATGAAGATTATGATGAGGAAGGGTAA 861 0.4425 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHSETGPDDRALSKRRKAAGDEGNESDEEAKRSKMRELGHTGTPGRGRGRGRGRGRGRGARTVERDICHQQVESEPCSSIQQISNDVPNASMPIDNGVQSKEFPKENCAVHEESAQSFRNIDLNANINENEDKNASADVEASLPEPSAMDIKHEEIPGWSLSDVDKMTIDTMQLANLGSRVEEDDEDYDEEG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01997 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 118 - -
Spst5g01997 286 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Spst5g01997 286 MobiDBLite consensus disorder prediction 91 137 - -
Spst5g01997 286 FunFam dr1-associated corepressor homolog 1 86 - -
Spst5g01997 286 MobiDBLite consensus disorder prediction 91 157 - -
Spst5g01997 286 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Spst5g01997 286 SUPERFAMILY Histone-fold 4 101 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01997 Spst-Chr5 55475468 55479731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01997 1 275 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.871 4.40e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst5g01997 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01997 K21752 - gmx:100810093 464.151