Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01996 ATGGCATCATCACACAATTTGGAAGGTTATTCATCTGAAACCTCTAGTATCTCTGTTCCCTCAGACGACATTTGTCGTAAACCTATGATTGAGGAAAAGAAGAACAACGAGGTGACAACGATAAAGGAGAAAGGTATCAGATTTGAAGAACATCAAGCTTCTAATTCCAAATCTCATATGGTGTTGGATTTTGTTAAGCTTCTCAATGATGAGTCAAATTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATTCCACCAATGTGGGAGGTTCATCTTCTAGGGTAAATCACACTCAAGTGGGAGGTTCATCTTCTAGGGTAAACCAGACTCAAGCCAGATATGAGAACAACAATGAGGAAAAATCGTCTGAGGCTAAAGTATTCTCTTGCAACTTCTGTAAGAAAGAGTTTTCTTCTTCACAAGCCTTGGGAGGACACCAAAACGCACATAAACAAGAACGTGCTCTTGCAAAACGTCGCCAAGGGATTGATGGTGGTGGTTTTGGAAACCCTCATATTCTGTATTATCCTTATCCCACACACTCTTTTTATGGATCTTATAATAGGGCTCTTGGCGTTCGAATGGAGTCCATGATTCACAAACCTGCATACCCTTCATCCTCACCAGGTTTAAGGTTTGGTCAAGGATTGTCAAGACAGGAAATGTTACGTCCTTCTTCTCATGGTTTGCAACGAAGTAATAATGGAATTAGAATAATGGGGAGTGACACACCTTCAAAGACACAAGATGATCCTGGTACTACCAGACATAATATTCCATTCTTCATCAGAGAATCTCTTACAAATGTTGCTACCAAATCAAACTCCACTCCATTGAATACTGAGAACAACAAAGATCACTCCAGGAAAGAAGAAATCTCAAGTCCTAACTCTTCAGATGAGATTGATTTATCACTTAAACTTTAA 927 0.3927 MASSHNLEGYSSETSSISVPSDDICRKPMIEEKKNNEVTTIKEKGIRFEEHQASNSKSHMVLDFVKLLNDESNCGSKVELDFFNSTNVGGSSSRVNHTQVGGSSSRVNQTQARYENNNEEKSSEAKVFSCNFCKKEFSSSQALGGHQNAHKQERALAKRRQGIDGGGFGNPHILYYPYPTHSFYGSYNRALGVRMESMIHKPAYPSSSPGLRFGQGLSRQEMLRPSSHGLQRSNNGIRIMGSDTPSKTQDDPGTTRHNIPFFIRESLTNVATKSNSTPLNTENNKDHSRKEEISSPNSSDEIDLSLKL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01996 308 MobiDBLite consensus disorder prediction 221 308 - -
Spst5g01996 308 MobiDBLite consensus disorder prediction 91 116 - -
Spst5g01996 308 MobiDBLite consensus disorder prediction 1 22 - -
Spst5g01996 308 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Spst5g01996 308 MobiDBLite consensus disorder prediction 91 120 - -
Spst5g01996 308 Gene3D Classic Zinc Finger 103 164 - -
Spst5g01996 308 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 308 IPR044246 GO:0009788
Spst5g01996 308 MobiDBLite consensus disorder prediction 1 21 - -
Spst5g01996 308 MobiDBLite consensus disorder prediction 221 282 - -
Spst5g01996 308 Pfam C2H2-type zinc finger 127 152 - -
Spst5g01996 308 SUPERFAMILY beta-beta-alpha zinc fingers 125 155 IPR036236 -
Spst5g01996 308 MobiDBLite consensus disorder prediction 283 297 - -
Spst5g01996 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01996 Spst-Chr5 55471812 55472738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01996 118 203 C2H2 Transcription Factor Family AT5G10970 53.409 2.95e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst5g01996 zf-C2H2_6 4.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01996 - - gmx:102661483 379.793