Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01985 ATGCGAAAACTGACAAAGGAAGGACTGCAACAAACGGACAAAAGGGTTGGTCTCATGAATGAAATTCTAGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTTCAGTCTAGAATTCTAAGCATACGAGATGACGAGCTATCATGGTTCCGCAAAGCCCAGCTGCTATATGCTCTTAATTCTTTTATACTAAACAGCATCCCCGTTCTTGTGACGGTGACCTCATTTGGAATGTTCACTTTCCTTGGTGGAGAATTGACACCTGCAAGGGCATTTACCTCATTATCTCTGTTTGCAGTTTTGCGATTTCCTTTAAATATGCTTCCAAACTTACTAAGTCAGGTAGCAAATGCAAATGTCTCGTTGCAGCGTTTGGAGGAACTGTTCTTAGCTGAGGAACGAAATTTAAAACAAAATCCACCTATTGAACCTGGTCTTCCAGCCATTTCAATTGAGAATGGATACTTTTCTTGGGATCCTAAGGAAGAGAAACCAACATTATCAAATATCAATGTGGAAATACCAGTTGGCAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGCAAAACGTCACTTATTTCAGCAATGATCGGAGAGTTACCACCTTTAGCCGATGGAAATGCTACAATCAGAGGCACTGTTGCTTTTGTGCCTCAGATTTCATGGATTTATAATGCCACTGTTCGTGAGAACATACTATTCGGATCAAAATTTGAGCATGAACGATATCGGAAGGTTATTGATATCACTGCTTTACAGCATGATCTCAACTTACTACCTGGACTTGATTTCACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCTAGGGCTGTATATTCAAATTCGGATGTATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCACATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGCGAGGAAAAACCAGGGTTCTTGTCACAAATCAGCTACATTTTCTCCCTCAGGTGGATAAAATCATTCTGGTTAGTGAAGGAATGATTAAGGAGCAGGGAACCTTTGAGGAGTTAACAAAAAGTGGGCCTCTATTTCAGAAACTAATGGAAAATGCAGGGAAAATGGAACAACAAGCAGATAATAATGGAGATAGCGAAAGTATTGACAATGATACAAATTTACCCTTGAATAATGAAGCAAGTGTTGAATTAGCAAGTGATGCAAGTTATGAGAAGAAAGGAAAATTACGAAAATCAGTTCTTATTAAGAAAGAGGAGCGGGAGACAGGCGTGGTTAGTTGGAAAGTTATAATGCGGTACAAATCAGCACTGGGAGGACTGTGGGTAGTTTCCATACTCTTTGGATGCTACACATTAACCGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGCGTGTGGACATCTCAAGATTCCACTGCAGATTATAATCCGGCATATTTTCTTTTGATCTATGCACTTTTCTCATTTGGACAGGTATCTGTTGCACTTGCAAACTCTTATTGGTTGATCGTTTCAAGTCTTCGTGCTGCCAAAAGATTGCACAATGCAATGCTGGATAAAATCCTCCGGGCTCCTATGATATTCTTCCAAACTAATCCGGTTGGCCGCATAATTAATAGGTTTGCAAAAGATACAGGAGATATAGATACCAATGTTTTTAACTTGGTAAACATGTTTTTGGGGCAAGTCTGGCAACTACTTTCCACATTTGTTCTTATAGGCACAAGCACTGCTCGAGAGGTGAAGCGCATGGATTCCATTACAAGATCTCCTGTCTATGCACATTTTGGTGAATCGCTGAATGGTTTGCCAAGCATCCGTACTTATAAAGCATATGACAGAATGGCACATATTAATGGAAAATTTATGGATAACAACATCAGATTCACCCTTGTGAATATAAGTTCAAATCGTTGGCTCACCATAAGGCTGGAAACATTAGGAGGCCTCATGATTTGGTTCATAGCAACATCTGCGGTCTTGCAGAATGCAAGAGCTTCAAACCAGGCATTGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTCCTCAGGCAAGCAAGTAGAGCTGAAAACAGTTTAAACTCTGTTGAGCGTGTCGACACGTATATAAATTTGGAAACTGAGGCTCCAGGTGTAATTGAGACTAACCGTCCACCACCTGGATGGCCAACCTCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCAGTGCTGCATGGTTTGTCCTTCTCAGTACCTCCAACTGAAAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCATTATTCCGTATTGTGGAACTAACAAAAGGAAGAATCATTATTGATGGTTATGATATTTCTACATTTGGACTAGCAGATCTACGAAAGGTTCTTACTATCATACCACAATCTCCAGTTCTTTTTTCTGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGTTGATCTATGGGAGGCTTTAGAAAGGGCACATCTAAAGGACGTAATAAGAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGATAATTTCAGTGTTGGACAGAGGCAACTGCTTAGTCTAGGTAGAGCATTGCTTCGAAGATCGAAGGTTCTTGTCCTGGATGAAGCTACAGCTGCTGTAGATGTTAGAACTGATGCCCTTATACAGAAAACTATCAGACATGAATTTCAGTCATGCACAATGCTCATCATTGCACACAGACTAAACACAATCATTGACTGCAATCGGATTCTGCTGCTTGATTCTGGTCGGGTCCTTGAATACAGTTCACCAGAGGAACTCCTACAAAATGAAGGAACAGCTTTCTACAAGATGGTTCAAAGTACTGGAGAAGCAAATGCTCAGTATCTGTGCAGCCTAGTATTTGGAAGAACAGAGAACAACTCTGATGAATATAACAAGGAGTTGGAAAACCATATGAGACAATTAGCTTCTACTCACTGGACCGCTGCCACCCAGTTTGCCATAGATGCTACCCTTTCTTCATTACACCATCAACTTCAAAAACCAAGTGGTGAGGACAATAAAGATATCCTTGATAAAACAAAGGATGCAGTTACAACACTTCAAGAAGTTCTAGTGGGGAAGCATGATGAAGCCATAGAAGAGACACTGTATAAATACAATATTCCTACAGATAGATGGTGGTCTACTCTCTACAAAGTTATTGAAGGTCTTGCTATCTTGAAGAGGTTGCCTAAAGACAACATTCAACAGCTACAACTTGATTTTGATGGAAGATCTTTTCACTGA 3390 0.4021 MRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDDELSWFRKAQLLYALNSFILNSIPVLVTVTSFGMFTFLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPIEPGLPAISIENGYFSWDPKEEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAFVPQISWIYNATVRENILFGSKFEHERYRKVIDITALQHDLNLLPGLDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPQVDKIILVSEGMIKEQGTFEELTKSGPLFQKLMENAGKMEQQADNNGDSESIDNDTNLPLNNEASVELASDASYEKKGKLRKSVLIKKEERETGVVSWKVIMRYKSALGGLWVVSILFGCYTLTEVLRISSSTWLSVWTSQDSTADYNPAYFLLIYALFSFGQVSVALANSYWLIVSSLRAAKRLHNAMLDKILRAPMIFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSTFVLIGTSTAREVKRMDSITRSPVYAHFGESLNGLPSIRTYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWFIATSAVLQNARASNQALFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNSVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFSVPPTEKIGVVGRTGAGKSSMLNALFRIVELTKGRIIIDGYDISTFGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDVDLWEALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLGRALLRRSKVLVLDEATAAVDVRTDALIQKTIRHEFQSCTMLIIAHRLNTIIDCNRILLLDSGRVLEYSSPEELLQNEGTAFYKMVQSTGEANAQYLCSLVFGRTENNSDEYNKELENHMRQLASTHWTAATQFAIDATLSSLHHQLQKPSGEDNKDILDKTKDAVTTLQEVLVGKHDEAIEETLYKYNIPTDRWWSTLYKVIEGLAILKRLPKDNIQQLQLDFDGRSFH 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01985 1129 CDD ABCC_MRP_domain1 152 352 - -
Spst5g01985 1129 CDD ABC_6TM_ABCC_D2 455 727 IPR044726 GO:0140359
Spst5g01985 1129 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 457 715 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst5g01985 1129 ProSitePatterns ABC transporters family signature. 889 903 IPR017871 GO:0005524|GO:0016887
Spst5g01985 1129 Gene3D - 736 988 IPR027417 -
Spst5g01985 1129 Coils Coil 111 131 - -
Spst5g01985 1129 SMART AAA_5 179 359 IPR003593 GO:0016887
Spst5g01985 1129 SMART AAA_5 778 971 IPR003593 GO:0016887
Spst5g01985 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 985 IPR027417 -
Spst5g01985 1129 SUPERFAMILY ABC transporter transmembrane region 439 732 IPR036640 GO:0005524|GO:0016020
Spst5g01985 1129 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 992 - -
Spst5g01985 1129 Coils Coil 1001 1021 - -
Spst5g01985 1129 CDD ABCC_MRP_domain2 750 970 - -
Spst5g01985 1129 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 752 986 IPR003439 GO:0005524
Spst5g01985 1129 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 120 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst5g01985 1129 FunFam ABC transporter C family member 2 146 392 - -
Spst5g01985 1129 Gene3D - 133 401 IPR027417 -
Spst5g01985 1129 Pfam ABC transporter 769 917 IPR003439 GO:0005524
Spst5g01985 1129 Pfam ABC transporter transmembrane region 457 588 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst5g01985 1129 Pfam ABC transporter transmembrane region 1 108 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst5g01985 1129 Pfam ABC transporter 170 305 IPR003439 GO:0005524
Spst5g01985 1129 Gene3D ABC transporter type 1, transmembrane domain 1 132 IPR036640 GO:0005524|GO:0016020
Spst5g01985 1129 Gene3D ABC transporter type 1, transmembrane domain 417 733 IPR036640 GO:0005524|GO:0016020
Spst5g01985 1129 FunFam Multidrug resistance-associated protein member 4 736 988 - -
Spst5g01985 1129 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 152 376 IPR003439 GO:0005524
Spst5g01985 1129 SUPERFAMILY ABC transporter transmembrane region 1 132 IPR036640 GO:0005524|GO:0016020
Spst5g01985 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 375 IPR027417 -
Spst5g01985 1129 ProSitePatterns ABC transporters family signature. 278 292 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01985 Spst-Chr5 55393205 55400970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01985 750 986 Calmodulin-binding Proteins AT2G36910 32.365 8.28e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01985 - - vun:114175221 2099.71