Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01978 ATGATCGAAGAAGAAGCTATCCCCGCCACCACCTCCGAATGGGCCACGACGCGTGATGCAGTTGCTGGTCATGGAATGAGCGGCGACGGCAGTGGACTGGATGCTTCAACTCCTGGGACTCTGGTCATTATGAATCAACATGAGGTTGATGACAATGTGCATGAGGTTGATGACAATGTGCATGGTGAGGATCAGACTGGGTCACAGTTCAATGATGAGGGTAATGGAGGAGGCGTGGTTCTAAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATAAGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTACTCAGGCCTGTCTCGTTGTGGAAAAAGTTGCCGATTGCGATGGGCCAATCACCTAAGGCCAAACTTAAAGAAATGTGCATTTACTGCAGAAGAGGAGAAGATGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCACATGTAAGCATGTTTGTTGATGATGCCTAA 519 0.4836 MIEEEAIPATTSEWATTRDAVAGHGMSGDGSGLDASTPGTLVIMNQHEVDDNVHEVDDNVHGEDQTGSQFNDEGNGGGVVLKKGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKCAFTAEEEKMIAELHAKMGNKWARMAAHVSMFVDDA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01978 172 Gene3D - 138 167 - -
Spst5g01978 172 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Spst5g01978 172 FunFam MYB-related transcription factor 82 135 - -
Spst5g01978 172 SMART sant 135 171 IPR001005 -
Spst5g01978 172 SMART sant 82 132 IPR001005 -
Spst5g01978 172 CDD SANT 85 130 IPR001005 -
Spst5g01978 172 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 64 164 - -
Spst5g01978 172 MobiDBLite consensus disorder prediction 57 78 - -
Spst5g01978 172 ProSiteProfiles Myb-like domain profile. 81 130 IPR001005 -
Spst5g01978 172 Pfam Myb-like DNA-binding domain 138 165 IPR001005 -
Spst5g01978 172 Pfam Myb-like DNA-binding domain 83 130 IPR001005 -
Spst5g01978 172 CDD SANT 138 165 IPR001005 -
Spst5g01978 172 Gene3D - 82 135 - -
Spst5g01978 172 SUPERFAMILY Homeodomain-like 84 160 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01978 Spst-Chr5 55327403 55334209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01978 78 171 MYB Transcription Factor Family AT5G06100 75.532 1.36e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst5g01978 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01978 K09422 - gmx:100805804 211.075