Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01976 ATGTCACTCCCATCATGTTTTCTTCTCTTTCTCTTCCTCTTAGCCCCATTAATCTTGGCTCAATCTCCACCTTCTCCTTCCTCTTCTGTTGCTTGCAAAGCCACACTATATCCAAAGCTATGCCGTTCCATTCTCTCAGCCATTCGCTCCTCCCCTTCTGACCCTTATGGCTATGGCAAGTTCTCCATAAAGCAAAGCCTCAAACAGGCACGTAAACTGGCCAAGGTGTTTGAGGACTTTCTCCAACGCCACCAAACATCATCTTCCCTTAACCATGCAGAACTTGCATCCCTGGTAGACTGCAGAGACCTCAACCAGCTAAACGTCGACTACTTAATGTCCATATCCGAAGAGCTCAAATCCGCAAGCTCCTCGGACTCTGAGCTGGTTGAGAAGATCGAGACTTACCTCAGTGCTGTGGCCACCAACCACTACACGTGTTATGATGGGTTGGTGGTGACCAAAAGCAACATTGCCAATGCCCTTGCCGTGCCACTCAAGGATGTTACCCAGTTGTACAGTGTCTCACTTGGGTTGGTCACTCAGGCTCTTGACAAGAACCTCAGAAGGAATAAGACCCGCAAACATGGCCTTCCCACCAAGGCCTTCAAGGTTCGGCAACCACTAGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGTTGCACCAAGTTATCAAATTGTACTAGAAGTGGAAGGAATCTTAAAGAAAGTGGAAGCCAAGGAATTTTATTATACGATTTTGTGATTGTGAGTTCTTATGCAATAGACAACTACACTTCCATTGGAGAGGCTATTGCTGCTGCACCCAATAACACAAAGCCTGAAGATGGATATTTCCTTGTGTATGTTAGGGAGGGAATCTATGAGGAATATGTAGTCATTCCCAAAGAAAAGAAGAATATATTGCTTGTTGGAGATGGTATTAACAAGACTATCATCACAGGGAACCATAGTTTTATAGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTTTCTGGAGAAAGATTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGACCTGTAAAACACCAAGCAGTAGCAGTGAGGAATAATGCTGATCTCTCTACATTCTACCGCTGCAGTTTTGAAGGATATCAAGACACTCTCTATGTTCACTCTTTGAGGCAATTCTACAGAGCATGTGAAATCTATGGCACTGTGGACTTCATCTTCGGCAACGCAGCCGTGGTCTTCCAAGACAGTAAGATCTATGCTAGAAAACCATTACCAAACCAGAAGAATGCTGTGACAGCACAAGGAAGAACTGATCCTAATCAGAACACTGGCATTTCAATCCAAAACTGCACCATTGATGCTGCACCAGACTTGGCTGCGGACTTGAATTCAACGGAAAGTTACTTAGGTCGGCCATGGAAGGTGTATTCAAGGACTGTCTACCTGCAGTCATATATTGGAAATGTTATTCAACCTTCAGGGTGGTTAGAGTGGAATGGCACAGTTGGGTTAGACACCCTCTTTTATGGTGAGTTCAACAACTATGGACCTGGTTCTAACACTAGCAATAGAGTACAATGGCCAGGTTACTTTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCCTGAACTTTACGTTGGGAAATACTTGGCTTCCTGACACAGATATACCTTACACTGAAGGACTACTAAGATAG 1692 0.4409 MSLPSCFLLFLFLLAPLILAQSPPSPSSSVACKATLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQARKLAKVFEDFLQRHQTSSSLNHAELASLVDCRDLNQLNVDYLMSISEELKSASSSDSELVEKIETYLSAVATNHYTCYDGLVVTKSNIANALAVPLKDVTQLYSVSLGLVTQALDKNLRRNKTRKHGLPTKAFKVRQPLEKLIKLLRTKYSCTKLSNCTRSGRNLKESGSQGILLYDFVIVSSYAIDNYTSIGEAIAAAPNNTKPEDGYFLVYVREGIYEEYVVIPKEKKNILLVGDGINKTIITGNHSFIDGWTTFNSSTFAVSGERFIAVDVTFRNTAGPVKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRACEIYGTVDFIFGNAAVVFQDSKIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAADLNSTESYLGRPWKVYSRTVYLQSYIGNVIQPSGWLEWNGTVGLDTLFYGEFNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYTEGLLR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01976 563 Pfam Plant invertase/pectin methylesterase inhibitor 31 178 IPR006501 GO:0004857
Spst5g01976 563 CDD PMEI-like_3 31 181 - -
Spst5g01976 563 NCBIfam pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
Spst5g01976 563 Gene3D - 248 563 IPR012334 -
Spst5g01976 563 Pfam Pectinesterase 249 546 IPR000070 GO:0030599|GO:0042545
Spst5g01976 563 PANTHER PECTINESTERASE 15 551 - -
Spst5g01976 563 FunFam Pectinesterase 245 561 - -
Spst5g01976 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Spst5g01976 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Spst5g01976 563 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Spst5g01976 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 183 IPR035513 -
Spst5g01976 563 SMART PMEI_2 23 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01976 Spst-Chr5 55283588 55287701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01976 31 562 Carbohydrate Esterase AT3G10720 61.266 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01976 K01051 - gmx:100816503 1016.14