Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01975 ATGAACAGAACTGTGTTGGGTCTTTGGGGAGCAAACTGTTACTTACACGTTCCCACCTCAACAATCTTGAGTGCACAAGCCTTCAGCATGTCATCCTTCAAATCCTACGGGAAAGTTGATGAGCATGAGCAGATGGTGTTGGAGGCAAGGAGGAAAACCCGAAAGAGGATCACAATATGCCTCTCATCAATAGTCCTAGCAGGTGTTGTTTTTGCTGCTGTTTTTGGCATTCTTGGAACCACTCGTGACAATTCACCACAAGGTGCTGGTGATGCTCACACTGTGACCAATTCCGTGAAGGCTGTTTGTGATGTGACATTGTACAAAGACTCATGCTACACCAGCCTTGGCTCTGCTGTGGAATCAAGGAAGGTTCAGCCTCAGGAGTTGTTCGTGTTGTCAATAAAGGTGGCTTTATCTGAAGTGTTCAAAGCTGTTGAGTATTTCAGTGATCATGATCATGGAGTTTTCAAAGGGTTGGTGAAGGACAGAAGGACTAAGGAGGCTTTGAAAAATTGCAGGGACCTTTTGGGTCTTGCGGCTGACCATCTGAATAGCTCCTTGACATCAGGGGAAAAGTTTTCCCTTCTTGAAGTTTTTCAGGATCTTGAAACATGGTTAAGTGCTGCAGGTACTATATTAATTATAAGCATAGTCAGAATTTATAGACATACATTCAAGGCTCTTTCTTGGCAACATGCAAAGTGGACATACCAGCAGACTTGTATTGAAGGCTTTGAAAATGAAAAAGAAGCAATTAAGACAAGTGTAGTAAGCTATCTCAAAAATTCTACACAGTTCACCAGTAACAGTCTTGCCATCATTACCTGGATCAACAAGGCTGCAACCACACTGAACCTGCGGCGCTTACTGAGTTTACCTCATCAGAATGAAGCACCAGAATGGCTTCATTCTCAAGATAGGAGGCTGCTTCTAACTCAGGATTTGAGGAAGAAAGCTGATATTGTTGTGGCCAAAGATGGCAGTGGCAAATATAAGAAAATTTCTGATGCACTTAAACATGTTCCTAAAGAGAGTAGCAATAGGACTGTGATCTATGTGAAGAGAGGGGTTTACTATGAAAATGTGAGGGTTGAGAAGACCAAATGGAATGTGATGATGATTGGTGATGGAATGACTTCTACTATTGTATCTGCCAGTCTTAACTTTGTGGATGGCACACCAACATTTTCGACAGCAACATTTTCTGTATTTGGAAGGAATTTCATAGCTAGAGATATGGGTTTTGTCAACACTGCTGGTCCACAGAAGCATCAAGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAGGTGTCACATTGATGCATATCAGGATACTCTCTATGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATCTATGGCACGGTTGATTTCATTTTTGGCAATTCTGCAGTTGTGATCCAAAACTGCAATATTAGGCCAAAGTTACCAATTCCTGGTCAGCAGAACACAATCACAGCTCAGGGAAAAATTGACCCCAACATGAACACTGGGATCTCCATTCAGAATTGCAACATTTCACCCTTTGGTAACTTGAGTTCTGTCCAGACCTACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTACATGAAATCCAGAATGGAAAGCTTTGTGAACCCCAAAGGATGGTTACCATGGACAGGGAATTCAGCTCCAGACAGCATTTTCTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAATAATAGGGTGAAGTGGAGGGGTTTGAGAACCATTACTAGTAAACAAGCCAGCAAGTTTACTATCAAGGCTTTTCTACATGGAGATAAATGGATTTCTGCAGCAGGCGCCCCATTTAAGTCTGATCTATGA 1884 0.4236 MNRTVLGLWGANCYLHVPTSTILSAQAFSMSSFKSYGKVDEHEQMVLEARRKTRKRITICLSSIVLAGVVFAAVFGILGTTRDNSPQGAGDAHTVTNSVKAVCDVTLYKDSCYTSLGSAVESRKVQPQELFVLSIKVALSEVFKAVEYFSDHDHGVFKGLVKDRRTKEALKNCRDLLGLAADHLNSSLTSGEKFSLLEVFQDLETWLSAAGTILIISIVRIYRHTFKALSWQHAKWTYQQTCIEGFENEKEAIKTSVVSYLKNSTQFTSNSLAIITWINKAATTLNLRRLLSLPHQNEAPEWLHSQDRRLLLTQDLRKKADIVVAKDGSGKYKKISDALKHVPKESSNRTVIYVKRGVYYENVRVEKTKWNVMMIGDGMTSTIVSASLNFVDGTPTFSTATFSVFGRNFIARDMGFVNTAGPQKHQAVALMTSADQAVYYRCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPIPGQQNTITAQGKIDPNMNTGISIQNCNISPFGNLSSVQTYLGRPWKNYSTTVYMKSRMESFVNPKGWLPWTGNSAPDSIFYAEFQNVGPGASTNNRVKWRGLRTITSKQASKFTIKAFLHGDKWISAAGAPFKSDL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01975 627 Gene3D - 316 627 IPR012334 -
Spst5g01975 627 ProSitePatterns Pectinesterase signature 2. 465 474 IPR033131 -
Spst5g01975 627 Gene3D Invertase/pectin methylesterase inhibitor family protein 95 213 IPR035513 -
Spst5g01975 627 Gene3D Invertase/pectin methylesterase inhibitor family protein 221 279 IPR035513 -
Spst5g01975 627 NCBIfam pectinesterase inhibitor domain 92 211 IPR006501 GO:0004857
Spst5g01975 627 Pfam Pectinesterase 321 613 IPR000070 GO:0030599|GO:0042545
Spst5g01975 627 CDD PMEI-like_3 101 280 - -
Spst5g01975 627 FunFam Pectinesterase 315 627 - -
Spst5g01975 627 Pfam Plant invertase/pectin methylesterase inhibitor 98 274 IPR006501 GO:0004857
Spst5g01975 627 SUPERFAMILY Pectin lyase-like 319 624 IPR011050 -
Spst5g01975 627 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 226 278 IPR035513 -
Spst5g01975 627 PANTHER PECTINESTERASE 67 617 - -
Spst5g01975 627 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 97 213 IPR035513 -
Spst5g01975 627 SMART PMEI_2 94 274 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01975 Spst-Chr5 55279768 55282964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01975 35 627 Carbohydrate Esterase AT5G04960 54.077 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01975 - - gmx:100811152 981.859