Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01969 ATGTCTAAAGAGAAAGAGAAGGAGAAAAAGAAGAAAAAGAGCGACAGCGATGAAGACGACGACGTATTCTACTACCGCTATAGCAGTGTAAACCCTAATCATGCGCAATCCAATCCCAATCCAAATCCCAAAACCAATACCAAGGGATCCTCGTCGTTGGCACCCTCCAAATCAACTTTGTATGTTTCCAACATCGACTACTCGCTAACTAATTCCGATCTCCACACGCTTTTCTCCACTTTCGGCCGCATCGCGCGCGTCACGGTACTCAAGGACCGCCACACGCGCCTCAGCCGCGGCGTCGCCTTCATCCAGTTTGTCTCCCGCCACGACGCGCGCAACGCTGCTGCGCAGATGCACCGCAAGGTCCTCAACGGACGCACCCTCACCGCCTCCATCGCCGCCGACAACGGCCGCGCGCCCGAGTTCATTCGTAAGCGCGTCTACCGCGACAACGCCCGCTGCTTCGAGTGCGGCGCCGACGGACACCTCTCGTACGACTGCCCGCGCAACCAGCTCGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGCCGTGGGCCTTACCGCCGCGACGACGACAACGACGATGGCGGGGAGGATTCTGACGGTGTTGGAGCCGCTGCCCGGTTCGAAGATGACAATTGGGCGTCCGTCGTGGATGACGGCGCCGACGAGAGGCTGTTGACGGGCAACCGCGACGACGATGATGCTGTGGCTTTGAAGAGTAAGAAGAAAAAGAAGAAAGCCGGGTACTTCAGTGATGAGAGTGATGATGATGACTTTGATGGTTGA 795 0.5849 MSKEKEKEKKKKKSDSDEDDDVFYYRYSSVNPNHAQSNPNPNPKTNTKGSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDARNAAAQMHRKVLNGRTLTASIAADNGRAPEFIRKRVYRDNARCFECGADGHLSYDCPRNQLGPRQRPEPKRPRRGPYRRDDDNDDGGEDSDGVGAAARFEDDNWASVVDDGADERLLTGNRDDDDAVALKSKKKKKKAGYFSDESDDDDFDG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01969 264 SMART rrm2_1 59 132 IPR003954 GO:0003676
Spst5g01969 264 MobiDBLite consensus disorder prediction 29 55 - -
Spst5g01969 264 SUPERFAMILY RNA-binding domain, RBD 33 142 IPR035979 GO:0003676
Spst5g01969 264 Gene3D - 145 189 - -
Spst5g01969 264 SMART rrm1_1 59 132 IPR000504 GO:0003723
Spst5g01969 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Spst5g01969 264 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 261 IPR044598 GO:0000398|GO:0005689
Spst5g01969 264 MobiDBLite consensus disorder prediction 1 24 - -
Spst5g01969 264 MobiDBLite consensus disorder prediction 167 264 - -
Spst5g01969 264 MobiDBLite consensus disorder prediction 176 195 - -
Spst5g01969 264 MobiDBLite consensus disorder prediction 215 255 - -
Spst5g01969 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 129 IPR000504 GO:0003723
Spst5g01969 264 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 6 142 - -
Spst5g01969 264 ProSiteProfiles Zinc finger CCHC-type profile. 154 170 IPR001878 GO:0003676|GO:0008270
Spst5g01969 264 SUPERFAMILY Retrovirus zinc finger-like domains 138 171 IPR036875 GO:0003676|GO:0008270
Spst5g01969 264 MobiDBLite consensus disorder prediction 1 55 - -
Spst5g01969 264 SMART c2hcfinal6 154 170 IPR001878 GO:0003676|GO:0008270
Spst5g01969 264 Gene3D - 1 142 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01969 Spst-Chr5 55227807 55228601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01969 60 134 Eukaryotic Initiation Factors Gene Family AT2G23350 32.000 6.36e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01969 K13154 - gmx:100814914 318.161