Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01967 ATGGCCAGGAGAGGAACTGGATCTTTGGGAAAGAGGATACAGCTTCTCACTAACCATTTTAGAGTTGATATGGGGAGGAACAAAGGCTACTTCTTTCATTATGATGTTGCCTTGCGTTATGAAGATGGGAAATCAGTTCAAGCCAAGGGTATAGGGAGAAAAGTTCTAGCTGAGGTTTGGAGAACAAATACTGAGCTGGAAGAGTTTAGTTTTGCATATGACGGTGGCCAAAATTTATTCACTCTTGATCCTCTACCATGTGAGAAGCAACAATATACTGTTGAGTTAAAAGAAAATTTATCAAGGAGGGTTGGAAGGATTGGACGCCCTGATATAAACTACGAGACCACAATTCCGTTGCGAGCAATTGAGAATGCAATGAATGATCAGCATTCTCGAAACTCTTCGGAAGCACCTGATGATGCTCTAAACATCATACAGAGACAGCATGCAGCAAAACTATCACAATATCGGTTGAATATTATCATTGTGGATATCAACTACGTAACTAAAATTCCATTGCATGAAATTGCAAATGCATTGAGTGGTCAGAATTCTAGAAACTTTCAAGAATCACTGAAGGTTCTAAACATGGTACTAAGGCAGCATGATGCAGAAAGGATATTGGAGGTGGTGTGCAAGCCTGCAGTGGTTTTCGCTCGACCTTTCGAGCCACACAAGGAGGATTATCTCTCAACGTTGCCTGGACCTGTGGTGGACTTCCTTCTCCAGAGTCAAAATGTTGGAAAGATTGAAAACATTAACTGGACAAAGGTGATAGACAGATATATATTGCCATTATATCTAGTAGTAGAGGCAAAAAGAATGCTTAAGAACCTTAGAATCGAGGTTAATGGCGTTGAATTCAAAATCACTGGACTGAGTGACTACACTTGCAGGAATCAGAAATTTCTATTAAGGCAAAAAGATGAAGAGAACGAAAATGAAATCACAGTTTATGACTACTTTACGAACAATAAAATGATTAGCCTGCATAGTTCAGCTGATATTCCGTGCATCAATGTTGCCACACCACAACGCCCGTCTTACTTTCCAATAGAGCTATGTGTACTGGTCTCCATGCAGCGGTACACCAAGGCACTGACAAATTTGCAAAGGGCTCAGGTAGTGAAAAAGACAAGGCAATGTCCCAAAGAAAGGAAAGCTGATGTTGAAAAATCATTAAGAAGCAACAAATATGAGGATGAATGTATGCTTCGCTCTCTTGACATTAACATTGATCTTAACATAACCCAACTTGAGGGTCGTGTATTGCAACCTCCAAAGCTTGTAGTCGGAAACAAAAGGGACATCACTCCCCTCAATGGGCGCTGGAATTTTTTTGATGAGCAACTATTTGCCCCTATGACAATTGATAAATGGGCCGTTGTAAGCTTCTCAAGTGAGTGTGACACAACACTGTTGATACAAAACATTGAGGAAATTAGTGCTGCTATAGGAATGAACATGAAGAATATACTACACAACAAGGTAATTGAAGAAAATTTCAGATTTATAAATCAACCAGCACATGTCAGGGTAGAACAAATGCATAAAAAGCTGCACAAGACTCTTCCGGGAAAACCTAGTTTTCTGCTGTGTATTCTTCCAAACAAGAATTCTGATATTTACGGTCCGTGGAAAAAGAAATTTTCAGTTGATGACGGGGTTGTAACGCAGTGTATTAGTGCACAACAAAAATTTGATCGTCGGTACATTACTAATGTACTCTTGAAAATCAATCTAAAGTTTGGCGGGATGAATACCAATCTGTCAAGGGAGCATGAGAAGAAAATTCCAATTGTTTTTGATAAACCCACCCTAATTCTTGGTATGCATGTTTCTCATGGATCTCCTGCTAGATCTAATGTTCCCTCCATTGCTGCGGTTGCGAGCTCAAGATGTTGGCCTCAAATTACACGTTATAGAGCTGCTGTCCGTGCACAGTCTGCAAAAAATCAGATGATTCAATCTTTGTTCATGTCTGATGACGCTGATTATCCTTCAGAGGATAAGGGTATCATCAGGGATGGAGTGAGTGAATCACAGTTCAAGCAAGTACTCAATGATGAGTTGAATCAAATAATACAGGCATGCAAATTACTTGACGAAGACTGGGATCCAAAGTTCACTTTAATTGTTGCCCAAAAGAATCATCATACTAGGTTCTTCAACCCCAAAGATGAAGAATATAATGTTCCAATTGGAACCGTAATTGACAGCACTGTCTGTGATCCCAAAAACAATGACTTCTACTTGTGTGCTCAAGTTAGGGACAAGATAAAAAAAGAAACAACCCGCCAACACGGAACAACTCGACCTGTTCACTACCATGTTTTACACGATGAAATCGGGTTCTCAACTGATGAACTGCAGGAACTCGTGCATTCTCTATCTTACACGTATCAAATTAGCACATCTGCTGTATCATTAGTTGCTCCTCTTTGTTATGCGCGCTTGGCCGCTAGACAGATGGCAAAATTTGTGAAGTGTGATAAACAAAGTAAGGCTTCTCTCAGGCATGGTGGAGACACATCGTCTGCTGCACATCCATTACCAATTCTTCCCCAACAACTCATGGAGAGCATGTACTTTTGTTAA 2601 0.4022 MARRGTGSLGKRIQLLTNHFRVDMGRNKGYFFHYDVALRYEDGKSVQAKGIGRKVLAEVWRTNTELEEFSFAYDGGQNLFTLDPLPCEKQQYTVELKENLSRRVGRIGRPDINYETTIPLRAIENAMNDQHSRNSSEAPDDALNIIQRQHAAKLSQYRLNIIIVDINYVTKIPLHEIANALSGQNSRNFQESLKVLNMVLRQHDAERILEVVCKPAVVFARPFEPHKEDYLSTLPGPVVDFLLQSQNVGKIENINWTKVIDRYILPLYLVVEAKRMLKNLRIEVNGVEFKITGLSDYTCRNQKFLLRQKDEENENEITVYDYFTNNKMISLHSSADIPCINVATPQRPSYFPIELCVLVSMQRYTKALTNLQRAQVVKKTRQCPKERKADVEKSLRSNKYEDECMLRSLDINIDLNITQLEGRVLQPPKLVVGNKRDITPLNGRWNFFDEQLFAPMTIDKWAVVSFSSECDTTLLIQNIEEISAAIGMNMKNILHNKVIEENFRFINQPAHVRVEQMHKKLHKTLPGKPSFLLCILPNKNSDIYGPWKKKFSVDDGVVTQCISAQQKFDRRYITNVLLKINLKFGGMNTNLSREHEKKIPIVFDKPTLILGMHVSHGSPARSNVPSIAAVASSRCWPQITRYRAAVRAQSAKNQMIQSLFMSDDADYPSEDKGIIRDGVSESQFKQVLNDELNQIIQACKLLDEDWDPKFTLIVAQKNHHTRFFNPKDEEYNVPIGTVIDSTVCDPKNNDFYLCAQVRDKIKKETTRQHGTTRPVHYHVLHDEIGFSTDELQELVHSLSYTYQISTSAVSLVAPLCYARLAARQMAKFVKCDKQSKASLRHGGDTSSAAHPLPILPQQLMESMYFC 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01967 866 ProSiteProfiles Piwi domain profile. 531 830 IPR003165 GO:0003676
Spst5g01967 866 Gene3D - 599 866 IPR036397 GO:0003676
Spst5g01967 866 ProSiteProfiles PAZ domain profile. 289 360 IPR003100 GO:0005515
Spst5g01967 866 Gene3D - 424 592 - -
Spst5g01967 866 Gene3D paz domain 233 364 - -
Spst5g01967 866 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 7 832 - -
Spst5g01967 866 Pfam N-terminal domain of argonaute 11 146 IPR032474 -
Spst5g01967 866 CDD PAZ_argonaute_like 235 359 - -
Spst5g01967 866 Pfam PAZ domain 272 376 IPR003100 GO:0005515
Spst5g01967 866 SMART Piwi_a_2 531 830 IPR003165 GO:0003676
Spst5g01967 866 Pfam Piwi domain 532 830 IPR003165 GO:0003676
Spst5g01967 866 SUPERFAMILY PAZ domain 235 400 IPR036085 GO:0005515
Spst5g01967 866 SUPERFAMILY Ribonuclease H-like 516 826 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01967 Spst-Chr5 55178224 55184200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01967 3 866 Eukaryotic Initiation Factors Gene Family AT1G48410 28.814 5.73e-106 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01967 K11593 - gmx:100812218 883.248