Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01966 ATGAAACAGAAAACAGAAAACAGAAACCGAAAGCAAGTGGAACGTAGAGCGTGTGAGATATTAGAAATGGAGGCCCCTAAACGTTTGCCTATGGCTAGGAGAGGAACGGGATCTTTGGGAAAGAGGATACGGCTTCTTGCTAACCATTTTAGAGTTGATATTGGGAGGAACAAAGACTACTTCTTCCATTATGATGTTGCCTTCCGTTATGACGATGGGAAACCAGTTCAAGCCAAGGGCATAAGGAGAAAAGTCCTAGATGAGGTTTGGGGAACAAATACTGAACTGGAAGAGTTTAGTTTTGCATATGACGGTGACCAAAATTTATTCACTCTTGACCCTCTACCATGTGAGCATCAACAGTATACTGTTGAGTTAAAGGACATTTTATCAAAGAGGGTTGGAAGGACTGGACGCCGTGATATCAACTACGAGACCACAACTCTGTTGCGAGCAATTGAGAATACAATGGATGATCGGAATTCTCGAAACTCTTCGGAAGCACCGGATGATGTTCTAAACATCATGCAGAGACAACATGCAGCAAAACTATCAGAATCTCGGTTGAAAATTATCAATGTGGATATCAACTATGTAACAAAAATTCCACTGCAGCAAATTGCAAATGCATTGGGTGATCAGAATTCTGGAAACTTTCAAGAAGCACTGAGAGTTCTAAACATTGTACTAAGGCAGCATGATGCAGAAAGGAGATGCCTTTTTGTTCGCAATTCCTTCTTTCAAAACAATAAGATAAATTGTAAGGATCTTGGAGGCGGTGTGCTAGCCTGCGCTGGTTTTCGCTCGACCTTTAGAGCCACACAAGGAGGATTATCTCTCAACGTTGATGTGTCGAATACAGTGATTGTAAAGCCTGGACCTCTGTTGAACTTTCTTATCCAGAGTCAAAATGTTGGGAAAATTGAAAACATTGACTGGACGAAGGCAAAAAAAATGCTTAAGAACCTTAGAATCGAGGTTAATGGTGTTGAATTCAAAATCACTGGACTGAGTGACTACACTTGCAGGACTCAGAAATTTCTATTAAGGAAAAATGGTGAAGAGAAGGAAAATGAAATCACAGTTTATGACTACTTTACAAAAAATAAAATGATTTCCCTGTATATTTCTGCTGATTTGCCGTGCATCAATGTTGACAAACCACAATGCCCGCGTTACTTTCCAATAGAGCTATGTGAAATGGTCTCGTTGCAGCGGTACCCCAAGGCACTGACAAATTTGCAAAAGGCTCGGGTAGTGAAAAAGACAAGGCAATGTGCCAAAGAGAGGAAAGCTGATGTTGAAAAATTGTTAAGAAGCAACAAATATGATAATGAATCTATGTTTCGCTCTCTTGATATTAACATCGATCATAACATAACAAGGCTTGAGGGTCGTGTATTGCAACCTCCACAGCTTGTAGTTGGAAACAAGAGGCACATCACTCCCCTCGATGGGCGCTGGAATTTTATCGATAAGCAACTATTTGCCCCTATGACAATTGACAAATGGGCCGTTGTTAGCTTCTCAATTGATTGTGACACAACACTGCTGATACAAAAAATTGAGGAAATTAGTGCTGCTCTAGGAATGAACATGATGAATATACTACACAACAAGGTAATTGAAGAGAATTTCAGATTTATAACTCAACCAGCACATGTCAGGGTAGAGCAAATGCATAAAAAGCTGCACAAGACTCTTCCAGGAACACCTAGTTTTCTGCTGTGTATTCTTCCAAACAAGAATTCTGATATTTACGGTCCGTGGAAAAAGAAATTTTCGGTTGATGACGGGATTGTAACACAGTGTATTAGTGCACAACAAAACTTTGATCGTCGCTACATTACTAATGTACTCTTGAAAATCAATCTAAAGTTTGGCGGGATGAATACCAATCTTTCAAGGGAGCATGAGAAGAAAATTCCTATGGTTTCTGATAAACCCACCATAGTTCTTGGTATGCATGTTTCTCATGGATCTCCTGCTAGGTCTAATGTGCCATCCATTGCTGCGGTTGTGGGCTCAAGATGTTGGCCTCAAATTACACGTTATAGAGCTGCTGTCCGTGCACAGTCAGCAAAAACTCAGATGATTCAATCTTTGTTCATGCCTGATGAGGCTGATCATCCTTCAGAGGACACGGGTATCATCAGGGAGATACTATTGGAATTTTTCGAAAGTTCAAAGAGTATAAAGCCTCAACAAATTCTCATTTTCAGGGATGGAGTGGGTGAATCACAGTTCAAGCAAATACTCAATGATGAGTTGAATCAAATAATACAGGCATGCAAATTACTTGACGAAGACTGGGATCCAAAGTTCACTTTGATTGTTGCCCAAAAGAATCATCATACTAGGTTCTTCAACCCCGCAGATAAAGAATATAATATTCCAATTGGAACCGTAATTGACAGCACTGTCTGCGATCCCAAAAACAATGACTTCTACTTGTATGCTCAAGTTAGGGACAAGATCACAAAACAAACGACTAGCCAACAGGGAACAACTCGCCAGCAGGCAACAACTCGCCAGCAGGCAACAACTCGCCAACAGGGAACAACTCGCCAACAGGGAACAACTCGACCTGTTCACTACCATGTTTTACACGATGAAATCGGATTCTCAACTGATGAACTGCAGGAACTCGTGCATTCTCTATCTTACTCGTATCAAATTAGCACTTCTGCTGTATCATTGGTTGCTCCACTTCGTTATGCGGGCTTGGCGGCTAGACAGATGGCAAAATTTGTGAAATGTGATAAACAAAGTAAGGCTTCTCGCAGGCATGGTGGAGACACGTCTTCTGCTGCACATCCATTACCAATTCTTCCCCAACAACTCATGGAGAGCATGTACTTTTGTTAA 2868 0.41 MKQKTENRNRKQVERRACEILEMEAPKRLPMARRGTGSLGKRIRLLANHFRVDIGRNKDYFFHYDVAFRYDDGKPVQAKGIRRKVLDEVWGTNTELEEFSFAYDGDQNLFTLDPLPCEHQQYTVELKDILSKRVGRTGRRDINYETTTLLRAIENTMDDRNSRNSSEAPDDVLNIMQRQHAAKLSESRLKIINVDINYVTKIPLQQIANALGDQNSGNFQEALRVLNIVLRQHDAERRCLFVRNSFFQNNKINCKDLGGGVLACAGFRSTFRATQGGLSLNVDVSNTVIVKPGPLLNFLIQSQNVGKIENIDWTKAKKMLKNLRIEVNGVEFKITGLSDYTCRTQKFLLRKNGEEKENEITVYDYFTKNKMISLYISADLPCINVDKPQCPRYFPIELCEMVSLQRYPKALTNLQKARVVKKTRQCAKERKADVEKLLRSNKYDNESMFRSLDINIDHNITRLEGRVLQPPQLVVGNKRHITPLDGRWNFIDKQLFAPMTIDKWAVVSFSIDCDTTLLIQKIEEISAALGMNMMNILHNKVIEENFRFITQPAHVRVEQMHKKLHKTLPGTPSFLLCILPNKNSDIYGPWKKKFSVDDGIVTQCISAQQNFDRRYITNVLLKINLKFGGMNTNLSREHEKKIPMVSDKPTIVLGMHVSHGSPARSNVPSIAAVVGSRCWPQITRYRAAVRAQSAKTQMIQSLFMPDEADHPSEDTGIIREILLEFFESSKSIKPQQILIFRDGVGESQFKQILNDELNQIIQACKLLDEDWDPKFTLIVAQKNHHTRFFNPADKEYNIPIGTVIDSTVCDPKNNDFYLYAQVRDKITKQTTSQQGTTRQQATTRQQATTRQQGTTRQQGTTRPVHYHVLHDEIGFSTDELQELVHSLSYSYQISTSAVSLVAPLRYAGLAARQMAKFVKCDKQSKASRRHGGDTSSAAHPLPILPQQLMESMYFC 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01966 955 Pfam N-terminal domain of argonaute 41 230 IPR032474 -
Spst5g01966 955 Gene3D - 467 635 - -
Spst5g01966 955 CDD PAZ_argonaute_like 292 402 - -
Spst5g01966 955 Gene3D paz domain 286 407 - -
Spst5g01966 955 Pfam Piwi domain 855 919 IPR003165 GO:0003676
Spst5g01966 955 Pfam Piwi domain 575 831 IPR003165 GO:0003676
Spst5g01966 955 SUPERFAMILY Ribonuclease H-like 464 921 IPR012337 -
Spst5g01966 955 MobiDBLite consensus disorder prediction 828 862 - -
Spst5g01966 955 ProSiteProfiles Piwi domain profile. 574 919 IPR003165 GO:0003676
Spst5g01966 955 SMART DUF1785_2 240 292 IPR014811 -
Spst5g01966 955 Pfam PAZ domain 298 419 IPR003100 GO:0005515
Spst5g01966 955 SMART Piwi_a_2 574 919 IPR003165 GO:0003676
Spst5g01966 955 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 28 921 - -
Spst5g01966 955 Pfam Argonaute linker 1 domain 242 290 IPR014811 -
Spst5g01966 955 ProSiteProfiles PAZ domain profile. 332 403 IPR003100 GO:0005515
Spst5g01966 955 Pfam Argonaute linker 2 domain 429 473 IPR032472 -
Spst5g01966 955 Gene3D - 641 955 IPR036397 GO:0003676
Spst5g01966 955 SUPERFAMILY PAZ domain 287 443 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01966 Spst-Chr5 55169128 55177137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01966 28 955 Eukaryotic Initiation Factors Gene Family AT1G48410 30.855 2.22e-128 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01966 K11593 - gmx:100812218 993.801