Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01954 ATGTTTGATGTAGATTTTTGCAAAAGTGAAGAATCTTTCCAAGATCATGTCAGCGAAGGAGACATGGGGCAGACCTCTCTTTCATTCAATAGATGTACAGATTCAATGGAGGAGACCTCTCTTCCATTGAATGGATGTACAGATTCAATGGGGCAGACCTCTTTTCCATTGAATGGATACACTGATTCAATGGGGGAGACCTCCCTTCCATTGAATGGATGGACAGACCCCATTACCTCTCTTTCTTTCACTGGATGTATAGATTCAATGGGGCAGAACTCTCTTTCATTCAATGGATGTACAGATTCAATGGGGCAGACCAATCTTTCATTCAATGGATGTACAGAGTCAATGGGGCATACCAATCTTTCATTGAATGGATGTACAGATTCAATAGTAGTAACCGATTCTATGCTATCTTCTACATGCTCAGATTCAGAAACATTGTTGCCTTATTTTGATGGGCCTAATTATCCCCATAGTCAGCAATTTGAAACGGTCAACAGGGAACAAATAACTTGGGCACCTCAGGAGGATAACAGTTTCTTCACCCTTTCACAAATGCCTGCCACGTTAGATTCCTATGCATATGAAGCATGTCAGATTGGGTTTCCCAGTGATGAACTGACTGTATTTGACAACAGTCAAAACCATCTTAACCTTCATGATCTTGCATTTCCTGGGACAAATTTTAAGGACGGTGGAGCTGAGGAAAATATGGTGTTTCCCACCCTGGAGGAGACACTAGGAGTTGCAGATTACAATTTTGGAGGATCCTATGAAGGGTTTCAACAACTTTATGATCCTTTGTGGTTTAATAACCTGTTGTGCCAGCAGGTCATTCCATTCACTGAAGAACTTCATGTCAACTCCAGTCAGCCTGATTCAGACAGAGTGGATCATATTGATCAAGAGACATTTGCTAAGAATTGTTTAGTGCTATCAGACGATGAAGCTGACATATTGCCTGCATTAGTAAACCAGGAAGTGAGCAAAAAGAAGAATGTTACCCTGGTTCTTGACTTGGATGAAACCTTGATCCACTCTTCCTTTGGGCAATGCGATGCTGACTTCACATTTCAAATTATCACTGATAGGGTGGCCACTGTGTATGTAAGAAAGAGACCCTTTCTCCAAGAATTTTTGGCGAAAGTTTCTGAGATGTTTGAAGTCATCATTTTTACAGCTAGTCAAAGCACATATGCTGCAAAATTGCTGGATGTTCTTGATCCTGATAATAAGCTCTTCATGCGACGCATGTACCGAGAATCGTGCACCTGGAATGATCGCCGCTGCGTCAAGGATCTGACAGTTCTTGGAATTGACCTGGCAAAAGTGTTCATAATTGACAACACTCCAGAGGTATTTAGACTTCAAGTTAACAATGGGATTCCAATCAAAAGTTGGTACAATGACCCTACTGACTGTGCTCTGCTTGCCCTGCTCCCATTCTTGGAAAAACTTGTTGATGTGGATGATGTAAGGCCAATCATTGCACAAGAATTTGGGGCAAAGGAAGCAATAGATAGCACTAATATTAGGAATCTTGATCCCCTTACAAGTTACCCTAAACCCCAACGCTCCCTTCCTCACCCTTCGCCTAGATCGAGTCAGAGGCTGAAGTTATTACTAATGGCTTTGAGGGTTATAGCAGTTTCGGCTGTTTCTACAGTATTAAGCTTTGTGGGTCTTCAGTTTTGCACAGACTTTTCTTTGGATAAAGTTAGATCAGATGGACTAATAGGCTGGAATTTAATTCACTTGGATAATGCCAGCCAAGACATTGAGTTGCCTTTGGGTTTGTACACCACCATAGGGTTACTGGTGAATTGCACGGTTAATTTATTTGTGCTTCTCAATCTTTGTATCAAGGCTAGGTTGTCCATGGCTGTGTTTTTCACAGAGTTATATGCTTCTGAAACTCGTAAACTGATTGAGCGTCTTGTTAATTATATCATTTACAAGGGGACATTTCTACCACTAATTGTGCCACCAACAATTTATCAAGCAGGTCTTTGGTCAACTTGGTTGGCTGTGCTTTGTTCTCTGAAGATGTTTCAAGCTCTAGCTAGAGATCGTTTGGAACGGCTGAATGCATCTCCTTCTGCTACACCCTGGACGTATCTTCGTGTATACTCAGCATTGTTATCTGTTTTCGCAGTTGATGTTATCTGGATAAGGTTTTGTCTGACAATATATGGAACACACGGGTCCCCTATGTATCTGTTATTATTCTTTGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCCATTTTAGTACATGGATTTCAGTTGCTTGACATATGGTTGCATCATTCAGCTTGCAATAGCAGTGATTTCCGAACACCTAAACTGCTTGACACATTAACTGCAGGTTCATTGTTAGAATGGAAGGGAGTTCTTATTCGGAACTTGGGGTTTTTCCTCGACATGGCAACATTTTTTATGGCACTTGGCCATTACTTGTATATATGGAGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCCGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCAATCGTAAATCGCATTAAAGGCTTTATCAAGCTAAGATTAGCCCTGGGAACACTTCACGCAGCTCTCCCTGATGCAACAACTGAGGAGCTAAGGGCATATGATGATGAATGTGCTATTTGTAGAGAACCAATGGCTAAGGCTAAAAAACTAAACTGCAAACATCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCAACTTGTCGAAAGCCACTTTTTGCAGGTGTGCCTGAAAATGAAGCAAGTTCCGATGCTGGGACTATATCTAGTGATGAACAGCTTGCACGCCAAATTAGTGCTGGATTGGATCGGCCAAACCCTGCTAGACATACCATGCCTACCGGATTGTATCCAAATCAGGCACTAAACACTCCTGAAGGAGTTCATTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATCCTTGGCCAAATCAAGGTGTTGACGGGGCTGGTCCTTCTACTGCTATCAGAACAGTGGGATTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCCTTTGAAGATTCTTCTTGGAACCTTTGGCCCATTAATCCCTCTCAGGCTTCTGCAAGTGCTTCAACCATTCCTCATCCGGGTGGAAGACCACCAGTACGAACTGGTAGTTTACATTTAAGGACTGCTTCACAGCCTTCAAATGATAATGTCGTGAATATACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATGATATTCCAGGACTTGCAAAGGACAAATTCAGTCATGGTTACTGTGAATAATCTTCTCCAAATGTGA 3408 0.4228 MFDVDFCKSEESFQDHVSEGDMGQTSLSFNRCTDSMEETSLPLNGCTDSMGQTSFPLNGYTDSMGETSLPLNGWTDPITSLSFTGCIDSMGQNSLSFNGCTDSMGQTNLSFNGCTESMGHTNLSLNGCTDSIVVTDSMLSSTCSDSETLLPYFDGPNYPHSQQFETVNREQITWAPQEDNSFFTLSQMPATLDSYAYEACQIGFPSDELTVFDNSQNHLNLHDLAFPGTNFKDGGAEENMVFPTLEETLGVADYNFGGSYEGFQQLYDPLWFNNLLCQQVIPFTEELHVNSSQPDSDRVDHIDQETFAKNCLVLSDDEADILPALVNQEVSKKKNVTLVLDLDETLIHSSFGQCDADFTFQIITDRVATVYVRKRPFLQEFLAKVSEMFEVIIFTASQSTYAAKLLDVLDPDNKLFMRRMYRESCTWNDRRCVKDLTVLGIDLAKVFIIDNTPEVFRLQVNNGIPIKSWYNDPTDCALLALLPFLEKLVDVDDVRPIIAQEFGAKEAIDSTNIRNLDPLTSYPKPQRSLPHPSPRSSQRLKLLLMALRVIAVSAVSTVLSFVGLQFCTDFSLDKVRSDGLIGWNLIHLDNASQDIELPLGLYTTIGLLVNCTVNLFVLLNLCIKARLSMAVFFTELYASETRKLIERLVNYIIYKGTFLPLIVPPTIYQAGLWSTWLAVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLSVFAVDVIWIRFCLTIYGTHGSPMYLLLFFEPFSIAFETLQAILVHGFQLLDIWLHHSACNSSDFRTPKLLDTLTAGSLLEWKGVLIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIVNRIKGFIKLRLALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGVPENEASSDAGTISSDEQLARQISAGLDRPNPARHTMPTGLYPNQALNTPEGVHWRGAGLDSGWLHPWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDSSWNLWPINPSQASASASTIPHPGGRPPVRTGSLHLRTASQPSNDNVVNILAMAETVREVLPHIPDDMIFQDLQRTNSVMVTVNNLLQM 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01954 1135 CDD HAD_FCP1-like 337 466 - -
Spst5g01954 1135 Pfam NLI interacting factor-like phosphatase 337 495 IPR004274 -
Spst5g01954 1135 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 548 1135 - -
Spst5g01954 1135 FunFam E3 ubiquitin protein ligase RIN2 860 939 - -
Spst5g01954 1135 SMART forpap2 334 476 IPR004274 -
Spst5g01954 1135 NCBIfam dullard-like phosphatase domain 336 498 IPR011948 GO:0016791
Spst5g01954 1135 SUPERFAMILY HAD-like 332 499 IPR036412 -
Spst5g01954 1135 SMART ring_2 887 928 IPR001841 -
Spst5g01954 1135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 861 935 IPR013083 -
Spst5g01954 1135 FunFam CTD small phosphatase-like protein 2 324 502 - -
Spst5g01954 1135 SUPERFAMILY RING/U-box 874 934 - -
Spst5g01954 1135 Gene3D - 322 502 IPR023214 -
Spst5g01954 1135 Pfam Ring finger domain 885 929 IPR001841 -
Spst5g01954 1135 CDD CUE_RIN3_plant 1096 1133 IPR035667 -
Spst5g01954 1135 Gene3D - 1094 1134 - -
Spst5g01954 1135 ProSiteProfiles CUE domain profile. 1095 1135 IPR003892 GO:0043130
Spst5g01954 1135 CDD RING-H2_AMFR 885 932 - -
Spst5g01954 1135 ProSiteProfiles Zinc finger RING-type profile. 887 929 IPR001841 -
Spst5g01954 1135 ProSiteProfiles FCP1 homology domain profile. 331 488 IPR004274 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01954 Spst-Chr5 55060334 55073877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01954 601 970 C3H Transcription Factor Family AT3G16090 26.904 8.43e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01954 K10636 - gmx:100820578 1089.33