Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01944 ATGGACATGATTCTGGAGGCAGATGCAAAAAATGTATCTCAGCATTCCTCGTCTTCTTCGGTTGTTGCTCTGGCAATCAAGGGTAACAAAAAAAGCAAATATGTGGTACAATGGGCACTTAATAAGTTTGTTCCTGAGGGAATGATTATCTTCAAGCTGATACATGTCCATGCTGGTATAAAAGGAGTTCCAACGCCAATGGGAAATGTGGTCCCTCTTTCACAAGTGCGCAGTGATGTAGCAACTGCATTCAAAAAGGAAGTGGAGTGGCAAGCAAACCAAATGCTGCTACCTTTCAAGAGAATGTGTGAGAAAAGAAAGGTGCATGTGGATGTTGTAGTGATTGAATCAGATGATGTGGCTATTGCAATAGCAGAGGAAGTGGCTAAGGGTGCTATAACCAAACTTGTTGTTGGAGCTTCATCTCGTGGCATATTTAAAAGTAAACAGAAGGGTATGTCTACAAAAATATCAGTAAGCACTCCAAGATTTTGCACAATTTATGTTATTTCAAAGGGAAAATTGTCCGTAAGACAATCGGACATGCCGATTGCTGGAAGCATTATAGACGATGCTAGTGAAACCAGTTTGTCTTCCAGCAACTCATCAAACTACGCTTCCACCTCTCAGACAGAATCTGCCTCAGTTTCATCATATGCTGGTTTACACTCGTCTTCCCTAGCAACACAACGATTTCAAGCTCTTTCAAGTATAAATAGTGCCCTTCTAAGCACAAATTCGAGTTTAACTGACACTAACCATTCTAGAGGCCAATCTCTAGATCTTGGGAGAGAAAATACTGCTACAAGCTCTGCAAGAAACTCTGACATTGATCATGCCTTAAGTCGAGTTTCTAGTTGCAAAAGCTTTATTTCAGATACTGAAACTTGGATTTATGATCAAAATTCTAGCAAGGATGTGCCACTAGCAACTACACTTCCATCTCCTAATAGGCAGGCAAAATTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGGCATGCCCAAGGACTGCATGCAGTTGCTCAAAGTGAGAAAATTGAAGCATCCCGAAAGCTGAATGACCTAAGCAAGAGACGGGCAGAAGAAACCATGAAAATGAAGGAGATTATTGCTAGGGAAGAGAAGGCAAAGGAATTAGCAAAACTAGAAAGAGAGAAATATCAGGAAGCATCCAGAGAAGCTGTATATTTGAAAGAATGTGCTGAAAGAGAGGCAGCAGAAAGGAAAGAAACAGAGTTGAAAGCCATTCGTGCTGCAAAAGATAAAGAAAAGTTGGAGGATGCTCTAAGTGGTACAATGCTGCAGTACCGGAAGTTTACATGGGATGAAATAGTCTCAGCTACTTCATCTTTCTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAATAGTATACAAGTGCAATTTGTATCATACAACTGTTGCCGTTAAAGTTCTCCGCACGAATGGAAACCTCAAAAGCAAGCAATTCCAACAGGAGTTAGAGATATTGAGTAAAATTCGTCATCCAAACTTGCTTCTTCTTCTTGGTGCATGTCCTGATCATGGATGTCTTGTATATGAATATATGGAGAATGGTAACTTGGAGGACAGACTGCTTAGGAAAAACAACACTGCCCCGATCCCATGGTTTGGGAGGTTTCGAATAGCTTGGGAAATCGCATCAGCTCTTGCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATTCATCGTGACTTAAAACCGGCAAACATCTTGCTAGGTCGTAACCTTGTTAGCAAAATTGGTGACATTGGCCTTTCTACAGTACTCCAGTCAGATAATTTATCTACCATGTACAAGGACACAGCACCTGTTGGGACACTCTGCTACATTGATCCTGAATATCAAAGGACCGGGTTAATATCTCCAAAATCTGATGTTTATGCTTTTGGAATGGTGATATTACAGTTATTGACAGCAAAACCAGCAATAGCACTTGCTCATAAGGTTGAAACAGCAATTGATGGTGGGAATTTGACAGATATATTGGATCCAGAGGCAGGGGCTTGGCCTTTTCAAGAAACACTAGATTTGGCTTTGTTAGGAATGAGCTGTGCAGAACTTAGGCGTAGAGACCGGCCTGATTTAAAAGATCAAGTTCTTCCAACGCTTGAGAGATTGAAAGAAGTTGCTGATAGAGCCCAACATTCTGCTTCAACTGTTATTATTAAATCCAAACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCTGATGGATATACATATGATCGCAAAGCAATTGAAAAATGGCTTGAAGAGAACGACAAATCACCAATGACAAACATGGTTTTGCCTCACAAGCATTTAATTCCTAATTACACACTTTTGTCAGCAATCTTGGAGTGGAAGTCCGGAGAATCATGA 2424 0.4072 MDMILEADAKNVSQHSSSSSVVALAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVHAGIKGVPTPMGNVVPLSQVRSDVATAFKKEVEWQANQMLLPFKRMCEKRKVHVDVVVIESDDVAIAIAEEVAKGAITKLVVGASSRGIFKSKQKGMSTKISVSTPRFCTIYVISKGKLSVRQSDMPIAGSIIDDASETSLSSSNSSNYASTSQTESASVSSYAGLHSSSLATQRFQALSSINSALLSTNSSLTDTNHSRGQSLDLGRENTATSSARNSDIDHALSRVSSCKSFISDTETWIYDQNSSKDVPLATTLPSPNRQAKFNLELEKLRIELRHAQGLHAVAQSEKIEASRKLNDLSKRRAEETMKMKEIIAREEKAKELAKLEREKYQEASREAVYLKECAEREAAERKETELKAIRAAKDKEKLEDALSGTMLQYRKFTWDEIVSATSSFSEDLRIGMGAYGIVYKCNLYHTTVAVKVLRTNGNLKSKQFQQELEILSKIRHPNLLLLLGACPDHGCLVYEYMENGNLEDRLLRKNNTAPIPWFGRFRIAWEIASALAFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTVLQSDNLSTMYKDTAPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALAHKVETAIDGGNLTDILDPEAGAWPFQETLDLALLGMSCAELRRRDRPDLKDQVLPTLERLKEVADRAQHSASTVIIKSKPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLEENDKSPMTNMVLPHKHLIPNYTLLSAILEWKSGES 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01944 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 807 IPR013083 -
Spst5g01944 807 MobiDBLite consensus disorder prediction 247 274 - -
Spst5g01944 807 Pfam U-box domain 738 804 IPR003613 GO:0004842|GO:0016567
Spst5g01944 807 Gene3D Transferase(Phosphotransferase) domain 1 526 736 - -
Spst5g01944 807 Coils Coil 326 346 - -
Spst5g01944 807 Coils Coil 367 395 - -
Spst5g01944 807 PANTHER OS02G0152300 PROTEIN 21 801 - -
Spst5g01944 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Spst5g01944 807 Gene3D Phosphorylase Kinase; domain 1 432 525 - -
Spst5g01944 807 SUPERFAMILY RING/U-box 735 803 - -
Spst5g01944 807 CDD RING-Ubox_WDSUB1-like 738 792 - -
Spst5g01944 807 Pfam Protein tyrosine and serine/threonine kinase 458 652 IPR001245 GO:0004672|GO:0006468
Spst5g01944 807 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 148 - -
Spst5g01944 807 ProSiteProfiles Protein kinase domain profile. 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01944 807 ProSitePatterns Protein kinases ATP-binding region signature. 459 480 IPR017441 GO:0005524
Spst5g01944 807 SMART serkin_6 453 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst5g01944 807 ProSiteProfiles U-box domain profile. 736 807 IPR003613 GO:0004842|GO:0016567
Spst5g01944 807 SMART Ubox_2 740 802 IPR003613 GO:0004842|GO:0016567
Spst5g01944 807 Gene3D HUPs 9 152 IPR014729 -
Spst5g01944 807 CDD STK_N 23 173 - -
Spst5g01944 807 SUPERFAMILY Protein kinase-like (PK-like) 434 708 IPR011009 -
Spst5g01944 807 Coils Coil 408 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01944 Spst-Chr5 54982246 54989200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01944 19 804 U-box Gene Family AT4G25160 52.977 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Spst5g01944 PK_Tyr_Ser-Thr 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01944 - - gsj:114409387 1345.1