Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01938 ATGAAGAAGTTTGGTGTGGACCACTTAGGCGATGATGTTGCATGGATCGTCTTATTGTGTGAAACTTGGTGCATCGCCAAGGAAAAGCAGACAAATGCAGAGTCCTTTTTGGACTGGAACACCGTTCCTTTCTCCCCCTTTCAAGACCCTCGAAAGCCAGAGCGTTATATCCACGCGCTACCCCACTGGTCTAACACTCCCACAGCCCTCGCTGAAAGACACGTGTCGTTCACGCGGCTCTGCGAGAAGCTGAACGAAGGCATAGAAAATGGAAAATGTTTTAGTGGCGAGTGGTTTCTTATTGAACGACCACGCCTCTGCAGTTGTGTAAGGACGTTAGTCCTGGATCCGATGGAGCTGAAGTCAAATCTTACTCCTGTCCTTACTGATACCACACCCTTAACAAGGTCAAGGCTGGGTGTGCCTTCTGGTTTGTCACCTTACTCTTCTCCAAAAGGGCCTACCTTTCCCCATCATGGTCCCTTGCTGGCAATTCCAAGGAAGAAGACAGGAATTCTTGATGATTTTCGTTCTAGCGGTTGGCTTGATGCCATGAAATCTTCTTCTCCTACTCACGGTAAAGTATCCAAGGATCTCAGTCATGGGACTGGATCACCTGATGCTGCTTACAGTGCCTGGCTGCTAAAGTTTCCATCTGCACTTGCATCTTTGGATCAAATTACTAACTGTGCAAAAGGGAAGAGAATTGCATTGTTTCTAGATTATGATGGGACTCTTACACCCATTGTGGACAATCCTGACTATGCTTTCATGTCAGATAATATGCGTGCTGCTGTTAAAAAAGTAGCGGAATATTTTCCAACTGCAATAATTAGTGGAAGAAGACGTGACAAGGTATATGAATTTGTTGGAATAAGTGAGCTCTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCTAGACAATCTATTTCTGATGATCATCCCGATTCTGACAAGCAGGGTGTTGTTGAAGTTAATTTATTCCAACCTGCTTCTGAATTCCTGCCCATGATTGATGAGGTACTTGGGTTGCTCAAGGAGTGTACAAAAGATATTGAAGGAGCAACAGTTGAGAACAATAAATTTTGTGCATCTCTACATTACCGGAATGTAGATGAGGAGAGTTGGCAAATTGTGGGACAACGTGTGTATGATGTTCTGAAGCAGTATCCACGTTTGCGTTTAACTCATGGGCGGAAGGTTTTAGAGGTTCGGCCAGTGATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTACTTGAGTCACTTGGACTTAACAATTGTGATGACGTGCTAGCTATATATGTTGGAGATGATAGAACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGCTAATAAAGGTTGTGGCATCATAGTGTCCCCTGTCCCAAAAGAAAGCAATGCAATTTACTCTCTTCGTGAACCCTCAGAGGTGATGGAATTTCTGACATCACTTGCTGCATGGAAATCAAGCACTCAATAA 1494 0.4378 MKKFGVDHLGDDVAWIVLLCETWCIAKEKQTNAESFLDWNTVPFSPFQDPRKPERYIHALPHWSNTPTALAERHVSFTRLCEKLNEGIENGKCFSGEWFLIERPRLCSCVRTLVLDPMELKSNLTPVLTDTTPLTRSRLGVPSGLSPYSSPKGPTFPHHGPLLAIPRKKTGILDDFRSSGWLDAMKSSSPTHGKVSKDLSHGTGSPDAAYSAWLLKFPSALASLDQITNCAKGKRIALFLDYDGTLTPIVDNPDYAFMSDNMRAAVKKVAEYFPTAIISGRRRDKVYEFVGISELYYAGSHGMDIIGPPRQSISDDHPDSDKQGVVEVNLFQPASEFLPMIDEVLGLLKECTKDIEGATVENNKFCASLHYRNVDEESWQIVGQRVYDVLKQYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNNCDDVLAIYVGDDRTDEDAFKVLREANKGCGIIVSPVPKESNAIYSLREPSEVMEFLTSLAAWKSSTQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01938 497 NCBIfam HAD-IIB family hydrolase 238 454 IPR006379 -
Spst5g01938 497 NCBIfam trehalose-phosphatase 233 490 IPR003337 GO:0003824|GO:0005992
Spst5g01938 497 Pfam Trehalose-phosphatase 239 480 IPR003337 GO:0003824|GO:0005992
Spst5g01938 497 Gene3D - 333 497 IPR023214 -
Spst5g01938 497 Gene3D - 236 332 IPR023214 -
Spst5g01938 497 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 147 495 IPR044651 GO:0004805|GO:0005992
Spst5g01938 497 FunFam Trehalose 6-phosphate phosphatase 340 497 - -
Spst5g01938 497 FunFam Trehalose 6-phosphate phosphatase 334 410 - -
Spst5g01938 497 SUPERFAMILY HAD-like 237 491 IPR036412 -
Spst5g01938 497 CDD HAD_TPP 237 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01938 Spst-Chr5 54945050 54953537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01938 232 490 Trehalose Biosynthesis Gene Families AT1G70290 24.638 1.19e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01938 K01087 - gmx:100783008 680.248