Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01934 ATGAATAATTTTTCTCATGTTCCCCCGGGTTTTCGGTTCCACCCCACTGATGAAGAACTTGTTGACTACTACCTGAGGAAGAAAGTTACCTCAAGAAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCAATCTATTCGAAGCATGACTTGATAGGGATGAGGAAAACCCTAGTCTTTTACAAAGGTAGAGCCCCCAATGGACAAAAATCAGATTGGATCATGCACGAGTATCGACTTGAAACAGATGAAAATGGCACACCCCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGACTAACAACCATGCGTAAACTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACATGGATTCACCAAAGCAAAGCTCTCAACCAAATTTGCCCTACCAGTTCCCATTTCCATGCAAGAAAGAGCTTGATTTGCCATACAATTTGCCTCTCCACCTTCAATTGGAGAACCAAAAACTTCTTCAAGCTGCCTCCAACTCAATGACACCATATGGTGTAGAAGAAAGCCACCATGCCATGCAGCCAGCATCAATCATGCAACAAGTTCAACACTCTGGTCCACAAAATTTTCAGACAGTTTTTGGAAACCATGGCAATGAACAAGTGGCTGATTGGAGAGCTCTTCACAAGTATGTTGCTTCACAACTTAGTCAGGAAGATGCTCCCAAAGAGAATAGTTTCTCAAACTCTGGCAACAACAACATCTTTCATGTGAAGAACAGTAGCAATGTTGAACAGTTGAGGGACTTGGACAAAGAGGAAATGATGCCTGAAAATGCCTCAACTTCAAACTCAAGCTGTCCAATTGACATGTGGAAATAG 1032 0.4205 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDMDSPKQSSQPNLPYQFPFPCKKELDLPYNLPLHLQLENQKLLQAASNSMTPYGVEESHHAMQPASIMQQVQHSGPQNFQTVFGNHGNEQVADWRALHKYVASQLSQEDAPKENSFSNSGNNNIFHVKNSSNVEQLRDLDKEEMMPENASTSNSSCPIDMWK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01934 343 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Spst5g01934 343 MobiDBLite consensus disorder prediction 288 313 - -
Spst5g01934 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 287 - -
Spst5g01934 343 MobiDBLite consensus disorder prediction 327 343 - -
Spst5g01934 343 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Spst5g01934 343 MobiDBLite consensus disorder prediction 324 343 - -
Spst5g01934 343 FunFam NAC domain-containing protein 16 160 - -
Spst5g01934 343 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Spst5g01934 343 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Spst5g01934 343 MobiDBLite consensus disorder prediction 286 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01934 Spst-Chr5 54922495 54924220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01934 1 343 NAC Transcription Factor Family AT1G12260 58.427 1.87e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst5g01934 NAM 4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01934 - - gmx:100775867 595.119