Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01933 ATGGCCAAAAGTCTTACCCTAATCATTGTCTGCATATTCTTGTTTTCTCTTTCTTCCCCAGCCCTTTCAAGCTTTTTCTCAAATGCCATTGATTTTTGGTGCAATAAAACCCCACATCCTCAAACATGCAAGGATTTTGTCTCAGTAAATTATCATCCCCTTGAAGATGGTATCCCAAAAACTGCATTTCAATTCAAGAACCTCATCCTCAGAATTGCAATGCACCAATCAGTGAAAGCCCAAAGTCAGATCATGTGGTTGGGAAACAAATGTAGAAGCAAGCAAGAAAAAACAGCATGGTCAGATTGCATAACCCTCTACCAAGACACCATCAACCTTCTCAACCAAGCACTTCACCCTACCAAACAAAGCACAGGCTATGATCTCCAAACATGGCTCAGCACAGCCCTAACCAACATTGAGACATGCCAAACCGGGTTCCATGAGCTTGGAGTTGTCGACAATGTTCTACCCCTTATTCCCAACAAGAATATCTCAGAGATCATAAGCGACTTTTTGGCTCTTAACAATGCTTCTTCATTCATTCCTCCAAAGACTAACAAAAATGGCTTCCCGAGATGGTTATCTCCCAACGACAGGAAGCTTCTAGAGTCACCACCATCGTTATCACCAGATGTTGTGGTGGCTAAAGATGGTTCAGGGAACTTTGAGACCATCAAAGAAGCTTTGAAAGTAGTCCCCAAGATGAGTCAAAAGAGGTTTGTGATATATGTGAAACGTGGGGTTTACAATGAAAACATTGAGATTGAGAATTCTATGAAGAATGTTATGCTGTATGGTGATGGTATAAGGCTCACCATTATTTCTGGTAGCCGAAGTGTTGGAGGAGGTTCCACCACTTTTAATTCGGCAACCGTTGCGATTACAGGAGATGGATTCATTGGACGTGGCATCACATTCCGCAACAGTGCAGGCCCAGAAAATCACCAAGCAGTGGCAGTGCGTTGTGGTGGTGACCTCTCAGTCTTCTATCGGTGTGCATTTGAAGGCTACCAAGACACTCTCTATGTGCACTCGCAAAGACAGTTCTACAGGGAATGCTGCATTTATGGCACTGTGGATTTCATCTTTGGCAATGCTGCTGTGGTCTTCCAATCTTGCAATATATATGCAAGAAGGCCAATGCAGAAACAGAAAATCGCCATAACAGCACAGGGTAGAACAGATCCAAATCAAAACACTGGGATTTGCATTCAGAATTCACGTGTTATGGCTGCTGAAGACCTAGCCCCTGTGCTGAGCTCCTTCAAAACCTTCTTGGGCAGGCCATGGAGGGAGTATTCAAGGACAGTGTTCTTGCAAACTTACCTTGATGCAATGATTGACCCTTCAGGGTGGTTGGAGTGGAAAGACGATTTTGCCCTCGACACTTTGTACTATGGAGAGTACAAGAACCTTGGTCCTAGGGCTTCCACGAGAGGTAGAGTGAAATGGCGTGGCTACCGTGCCATAATAAGCGCTTCTGAAGCATCCAAATTCACAGTTGAGAATTTTATTGGTGGGAGATCATGGTTACCAGGCACAGGCATTCCATTTTTCTCAGGGCTCTATGATTAA 1578 0.4411 MAKSLTLIIVCIFLFSLSSPALSSFFSNAIDFWCNKTPHPQTCKDFVSVNYHPLEDGIPKTAFQFKNLILRIAMHQSVKAQSQIMWLGNKCRSKQEKTAWSDCITLYQDTINLLNQALHPTKQSTGYDLQTWLSTALTNIETCQTGFHELGVVDNVLPLIPNKNISEIISDFLALNNASSFIPPKTNKNGFPRWLSPNDRKLLESPPSLSPDVVVAKDGSGNFETIKEALKVVPKMSQKRFVIYVKRGVYNENIEIENSMKNVMLYGDGIRLTIISGSRSVGGGSTTFNSATVAITGDGFIGRGITFRNSAGPENHQAVAVRCGGDLSVFYRCAFEGYQDTLYVHSQRQFYRECCIYGTVDFIFGNAAVVFQSCNIYARRPMQKQKIAITAQGRTDPNQNTGICIQNSRVMAAEDLAPVLSSFKTFLGRPWREYSRTVFLQTYLDAMIDPSGWLEWKDDFALDTLYYGEYKNLGPRASTRGRVKWRGYRAIISASEASKFTVENFIGGRSWLPGTGIPFFSGLYD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01933 525 SMART PMEI_2 25 175 IPR006501 GO:0004857
Spst5g01933 525 Pfam Pectinesterase 212 508 IPR000070 GO:0030599|GO:0042545
Spst5g01933 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 178 IPR035513 -
Spst5g01933 525 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Spst5g01933 525 NCBIfam pectinesterase inhibitor domain 1 176 IPR006501 GO:0004857
Spst5g01933 525 Gene3D - 207 523 IPR012334 -
Spst5g01933 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Spst5g01933 525 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Spst5g01933 525 PANTHER PECTINESTERASE 13 513 - -
Spst5g01933 525 FunFam Pectinesterase 207 523 - -
Spst5g01933 525 SUPERFAMILY Pectin lyase-like 209 522 IPR011050 -
Spst5g01933 525 CDD PMEI-like_3 33 178 - -
Spst5g01933 525 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01933 Spst-Chr5 54915694 54917651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01933 5 523 Carbohydrate Esterase AT2G45220 56.154 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01933 K01051 - gmx:100776412 905.975