Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01918 ATGGCCTCCTCCTCGAGTAGCGGATTGACGTTCAAGCTGCATCCTTTGGTAATCGTAAACATCTCCGACCATTACACAAGGGTCAAGTCTCAGATGAACCCAACGCTCGCACCACCGCACAACAACAACAACAATAACAACAACAACGCAGCCGCACCCAACGGCGGCGACGGCGTCGTTTCGCCCCTCCCCCCGAGGGTCTATGGCTGCGTCATAGGCGTCCAGAAGGGCCGGACTGTCGAGATTTTCAACAGCTTCGAACTTCTCTATGATCCTTCCACGCATTCCCTTGATCGCACCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTGTTCCCACATTTCTACATACTGGGGTGGTATTCGACTGGGAGTGACGCGGAGGAATCCGACATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCTATCAATCACTCTCAGAAGGATCTCCCAGTCAGTATTTATGAAAGTGAACTGCATGTCATAGATGGGATTCCACAACTTATCTTTGTTCTCTCAAGCTACACTATTGAGACTGTTGAAGCAGAACGAATATCAGTTGATCACGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAATTGGCTGCTCATCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATAAAGGTGCTACATCACTATCTTCTAGCAATGCAAAAAGGTGATGTTCCTTGTGAGAATTCACTATTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAGTCCGGGAAATTTCAAGATGATTTCTTGATGGAGTACAATGATACCTTGTTGATTAGTTACCTGGCAATGCTGACCAACTGCTCAAGTGGAATGAATGAGCTGGTGGACAAATTTAATACGGCGTATGATAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGCACAGGTTATTGAAGCTTAGTATTGCTATGAGAGAATAG 1017 0.4533 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPPHNNNNNNNNNAAAPNGGDGVVSPLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIYESELHVIDGIPQLIFVLSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSGMNELVDKFNTAYDRHSRRGGRTAFMHRLLKLSIAMRE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01918 338 FunFam COP9 signalosome subunit 6 1 207 - -
Spst5g01918 338 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 145 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst5g01918 338 Gene3D Cytidine Deaminase, domain 2 1 207 - -
Spst5g01918 338 Pfam Maintenance of mitochondrial structure and function 193 307 IPR024969 -
Spst5g01918 338 CDD MPN_CSN6 9 322 IPR033859 GO:0000338|GO:0008180
Spst5g01918 338 SMART pad1_6 10 172 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst5g01918 338 MobiDBLite consensus disorder prediction 31 54 - -
Spst5g01918 338 MobiDBLite consensus disorder prediction 31 58 - -
Spst5g01918 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 317 - -
Spst5g01918 338 ProSiteProfiles MPN domain profile. 11 173 IPR037518 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01918 2 277 Eukaryotic Initiation Factors Gene Family AT2G39990 21.352 1.08e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01918 K12179 - gmx:100797079 601.282