Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01908 ATGTGGACATTTAATCTTGTCATATCACAGGAAATAAGCTTCAATGCACCTGTCGCTGGTTGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTTCGTGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATTTCATCAACTGTATCAAATGTTTTACAGGGGATCCAATCAGCTTTTACAATACCCGAGTATGATTTGAAATCTGCTGCTGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTCTTTAAGATTATTCAGGATAAGTTTGGCATACCTGCTGTGGTCTGCCCTGCTTTAGGTGGCCTTGGAGCTGGGATTATTGCTCTTAAATATCCTGGAATATTGTATTGGGGCTTCACAAATGTGGAAGAAATTCTACGTACTGGAAAGAGTGCTTCAGCCCCCGGAATATGGCTTCTAACTCAATTGGTAGCTTCTAAGGTTATTGCAACAGCTCTTTGCAAGGGATCTGGGCTAGTAGGTGGTCTTTATGCTCCAAGTTTAATGATAGGTGCTGCAGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAATTATTAATTCAGCAATTCCTGGAAATGCTGCTGTTGCTCAGCCCCCGGCATATGCTCTGGTTGGAATGGCTGCTACATTAGCATCTGTTTGTTCTGTTCCTTTAACTTCAGTACTACTTCTGTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCAGTGACAAACCAGTCGAAGGAGAGTGATACACCTGATGCAAGTAGCTCAGCAAAAGGATATTCTCCAGTTTCACATGCTGGAGATGATAATGAGGGTAACTGGAGAGAAGCCAATGATGGGAATAATTTAGAACTCCTTATTGTTGGGGATGGCGCTGATCTTGATACAATTGATAAGGAACTGCTTCTGGACAATCTTCAGGTTTCTCAGGCAATGTCAAAACAATATTTTAAGGTTTTGTCATCTGTAACCCTGAAAGAGGCAATAAAATGCATGCATGACAGCCATCAGAATTGTGTGCTGGTGGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACGTATGGTGACATAAGAAGGTGTCTGTCCCTGGAGTCTAATGACCCTTTGAAGAGTGATTCAGGGATTCTGGATGCAAACACATTTCTTGTTTCCTCTGTTTGTACTCGAGGGATGAGTTATCGAGGACGAGAGCGAGGAATTTTGACCTGCTATCCGAATACTAGTTTGGCTGTGGCCAAAGAGCTGATGGAGGCCAAGGGCATTAAGCAATTACCAGTGGTTAAACGCGGTGGAGATCACAATAGAGAAAAAAAGAGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATCAATCAAAGGCAAACAGCGTATCAAAATAGGACAGATAACAGTTTGGCAGTGACAACAACAAATGGCCATTAA 1503 0.4225 MWTFNLVISQEISFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLQGIQSAFTIPEYDLKSAAAMTRLVAWFTKFFKIIQDKFGIPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLVASKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEIINSAIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTNQSKESDTPDASSSAKGYSPVSHAGDDNEGNWREANDGNNLELLIVGDGADLDTIDKELLLDNLQVSQAMSKQYFKVLSSVTLKEAIKCMHDSHQNCVLVVDKEDFLEGILTYGDIRRCLSLESNDPLKSDSGILDANTFLVSSVCTRGMSYRGRERGILTCYPNTSLAVAKELMEAKGIKQLPVVKRGGDHNREKKRRIVGLLHYDALWQCLRKEINQRQTAYQNRTDNSLAVTTTNGH 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01908 500 Pfam Voltage gated chloride channel 13 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst5g01908 500 CDD Voltage_gated_ClC 13 253 - -
Spst5g01908 500 Gene3D Clc chloride channel 12 270 - -
Spst5g01908 500 PRINTS Chloride channel signature 226 245 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst5g01908 500 PRINTS Chloride channel signature 7 26 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst5g01908 500 PRINTS Chloride channel signature 208 224 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Spst5g01908 500 Pfam CBS domain 418 465 IPR000644 -
Spst5g01908 500 Pfam CBS domain 326 380 IPR000644 -
Spst5g01908 500 CDD CBS_pair_voltage-gated_CLC_euk_bac 330 470 - -
Spst5g01908 500 FunFam Chloride channel protein 311 470 - -
Spst5g01908 500 SMART cbs_1 333 381 IPR000644 -
Spst5g01908 500 SMART cbs_1 418 474 IPR000644 -
Spst5g01908 500 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 14 485 - -
Spst5g01908 500 MobiDBLite consensus disorder prediction 262 279 - -
Spst5g01908 500 ProSiteProfiles CBS domain profile. 330 387 IPR000644 -
Spst5g01908 500 SUPERFAMILY Clc chloride channel 14 260 IPR014743 -
Spst5g01908 500 SUPERFAMILY CBS-domain pair 324 478 IPR046342 -
Spst5g01908 500 Gene3D - 312 473 IPR046342 -
Spst5g01908 500 MobiDBLite consensus disorder prediction 262 295 - -
Spst5g01908 500 ProSiteProfiles CBS domain profile. 415 480 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01908 Spst-Chr5 54745805 54751379 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01908 K03281 - gmx:100796023 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01908 5 54745805 54751379 Spst5g01908 5 54745805 54751379 ECH