Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01898 ATGAATGTGACAAATAAGCCAAACCCAGATGGTTCCACCAATGGGTTTCAGTCTCAGCTTCAGCAACAACACAGTAATGGTTGGGAGGGATCATCTACACCCACACCCACTACGTCTTATCCTGCACCAACTGCTAGCTACCAGGACATTGTTCGTGATGCAAACCTCTTCTGGGAAAAGCTTCAAGCTTTTCACCAATCACTCGGCACAAAATTTAAGGTTGTTATTGTGGGAGGAAAGTCACTTGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTGTTGACCGTAAGTGGAAGGAAGTAATTCTGACCTTCAATTTCAAAGATACCATAACTAGTGCATCATTTGTGGTGCGCAAATCCTATCTATCGATGCTTTATCACTTTGAACAAGTGTATTATTTTGGGAGGCAAGGCTTTCCTCCCCAAACACCTGATATTATGATTAGAGGCCAAACAGGCCTTCCCAATAGCTCCACAACCATTCTGGAAGTTGCTGCTGTGAATGATTCACCTGTTCAGGGTACTCCAGTGCAGGGATATGATGCTGTGCTTTCTGGAACAATTGATGTGAAATTTGATGGTGGATATGTAGTCACAGTGACTGTGGGTTCTGAGGAGCTGAAAGGTGTTCTGTTTCATGTTCCTGATAACATGTCCCAGAGTTCTCATGCCGAAGGTATGGCTAGATCACGGAATCATGGTGAAGGCACATCTGGTTCGCAGAGTCGGAAGAGAGCAAAATATACACCACGTGATCCGTTTCGGCCAAAGTCAAACAGGAGCGGTTACAACTTTTTCTTTGCTGAGAATTATGCAAGGCTGAAGCCCTCTTATCATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAAAAAGGGGTGAAAGATAAGGAAAGATACAGAACTGAACTGATGGAGTACAAATCCAACAATTCAACTCCAAATGCTCAATAG 1026 0.4347 MNVTNKPNPDGSTNGFQSQLQQQHSNGWEGSSTPTPTTSYPAPTASYQDIVRDANLFWEKLQAFHQSLGTKFKVVIVGGKSLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITSASFVVRKSYLSMLYHFEQVYYFGRQGFPPQTPDIMIRGQTGLPNSSTTILEVAAVNDSPVQGTPVQGYDAVLSGTIDVKFDGGYVVTVTVGSEELKGVLFHVPDNMSQSSHAEGMARSRNHGEGTSGSQSRKRAKYTPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQVYQEKGVKDKERYRTELMEYKSNNSTPNAQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01898 341 CDD HMG-box_AtHMGB9-like 265 331 - -
Spst5g01898 341 FunFam High mobility group B protein 15 45 158 - -
Spst5g01898 341 Gene3D - 43 149 IPR036431 GO:0003677
Spst5g01898 341 SMART bright_3 52 143 IPR001606 GO:0003677
Spst5g01898 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Spst5g01898 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 24 338 - -
Spst5g01898 341 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Spst5g01898 341 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Spst5g01898 341 Gene3D High mobility group box domain 248 340 IPR036910 -
Spst5g01898 341 MobiDBLite consensus disorder prediction 1 44 - -
Spst5g01898 341 SUPERFAMILY HMG-box 264 335 IPR036910 -
Spst5g01898 341 MobiDBLite consensus disorder prediction 229 268 - -
Spst5g01898 341 MobiDBLite consensus disorder prediction 229 253 - -
Spst5g01898 341 SUPERFAMILY ARID-like 49 152 IPR036431 GO:0003677
Spst5g01898 341 CDD ARID_HMGB9-like 53 138 IPR045303 GO:0003677
Spst5g01898 341 SMART ARID_2 48 138 - -
Spst5g01898 341 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Spst5g01898 341 SMART hmgende2 264 333 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01898 Spst-Chr5 54680406 54684380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01898 18 337 ARID Transcription Factor Family AT3G13350 48.910 2.53e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst5g01898 ARID 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01898 - - gmx:100793029 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01898 5 54680406 54684380 Spst5g01898 5 54680406 54684380 ECH