Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01895 ATGCCGATGCTGCTAAGGAAGGCCTGGGATATGGTGTCATGGAGATCCGATTCATCAACGTCAGCATCATCATCATCAACGACAACTTCTTCACCAAAAGTGGCACGTTCTGACATGGGTGAATTGGAGCAGCTACCCAATGACATTTTGATGCAAATTCTGAGGCTTTTGGGTCCAAAAGATACTGCGAAATTGAGTGTGGTTTGCAAGAGTTTGAGATCCCATGTGTCTGATAATAGACTTTGGGTTCACTTCCTTCAGACCCATCAGGCTGAACCCTCTGGGGATTCTGTTTTCTTTGCCGAGACCACCTTGAGTTCTGGCTACCCTCTTCCATTGGAATTTTGTGTTGTGGTGATTGGTGCATGTGTGGTTGGTGTGGTAGTGATTCAAATTTTATGCCTTGGTCTTGCTTGTAAATTTGATGGATTGTGCTGCTGGAGATTGAAATTGTGTGTTCTGGTGGGTGGTGCAAATGCTATGGGGTCAGTCTGCATGTTTTTGGTGTTTTGTGCTTCTGTTTTGTTTGACGGGATAACATTCGTTGGCCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGATATTGTAAATTTGGTTGGAGCAAATACGAATGTCCATCTGGGCGATCAGCGACGTTTTTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGGCTTAGACACTTTTTCGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCTGTACCAATATGCCATTATGATGATACTCAATCAGCAAAAACTTCAAGACAACAGCTTAAAGAGGCAATATATGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTAGGAGCACTGAAACTTACAGGATTTCTCAGGGAAAAGATGCAATTGAATAACTTAAGTTTTCAATCTCTTTACACTGTTCGCACATTGAAAGAGAAGCTGTGCTATGTTGCACGTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATTTGAAGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACTGCAGAGATCTTATTCCAACCTCATCTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCCATAGGTCTCTGTGTGAAACATTGCCACTCTGCAGATTTACCAGGTGACAGTGATTGGTACAAGACTATAGTTTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCAGAAAGGGTAGAGAATGAACTCCATGCCTTACTTCCTCCCTACATGTCCAATGGAATTAGAGTCATACCTCCTCCATACGGTGCTGATACTCCATGGTTTGGAGCTAAGATTATTGGCAATTTAAGCACCTTTCCTGGTCATTGGTGTGTCACAAAAAAGCAGTTCCGTCAAAAGCCTAGACTCAGTCTCATATGGTGA 1626 0.4287 MPMLLRKAWDMVSWRSDSSTSASSSSTTTSSPKVARSDMGELEQLPNDILMQILRLLGPKDTAKLSVVCKSLRSHVSDNRLWVHFLQTHQAEPSGDSVFFAETTLSSGYPLPLEFCVVVIGACVVGVVVIQILCLGLACKFDGLCCWRLKLCVLVGGANAMGSVCMFLVFCASVLFDGITFVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTQSAKTSRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKEKLCYVARDYEAELSKDTQASFEAAGEGWFTLSKERFQTAEILFQPHLAGVQAMGLHQAIGLCVKHCHSADLPGDSDWYKTIVLSGGTACLPGLAERVENELHALLPPYMSNGIRVIPPPYGADTPWFGAKIIGNLSTFPGHWCVTKKQFRQKPRLSLIW 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01895 541 Pfam F-box domain 43 83 IPR001810 GO:0005515
Spst5g01895 541 SUPERFAMILY Actin-like ATPase domain 317 532 IPR043129 -
Spst5g01895 541 Gene3D - 29 109 - -
Spst5g01895 541 SUPERFAMILY Actin-like ATPase domain 203 323 IPR043129 -
Spst5g01895 541 SUPERFAMILY F-box domain 32 93 IPR036047 GO:0005515
Spst5g01895 541 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Spst5g01895 541 SMART fbox_2 45 85 IPR001810 GO:0005515
Spst5g01895 541 Gene3D - 308 506 - -
Spst5g01895 541 MobiDBLite consensus disorder prediction 17 35 - -
Spst5g01895 541 Pfam Actin 250 532 IPR004000 -
Spst5g01895 541 MobiDBLite consensus disorder prediction 17 37 - -
Spst5g01895 541 SMART actin_3 201 531 IPR004000 -
Spst5g01895 541 CDD NBD_sugar-kinase_HSP70_actin 204 348 - -
Spst5g01895 541 Gene3D Actin; Chain A, domain 4 351 434 - -
Spst5g01895 541 Gene3D - 247 533 - -
Spst5g01895 541 PANTHER ACTIN 245 533 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01895 Spst-Chr5 54640002 54650472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01895 250 533 Cytoskeleton Gene Families AT3G12110 33.447 4.32e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01895 K16616 - gmx:100791973 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01895 5 54640002 54650472 Spst5g01895 5 54640002 54650472 ECH