LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g01889	ATGGATTCCTATGGTAATACATGTGAGATAGTGGAATCAAGGGAAGAACTAATTTCTGACTTCAAAACGGTTGACAAACCTGAGAGTAGTTGTGCTCACAAATCAGGAAAAAAGTATTCGATTGAGGATGATATTAATCAGCTTTTCCAGGCTATTGATGTTAAAAGTTCATCCAGAGGTCGCAATTCATCACGTTTACAAAAGAGTGCTCTTAAAAGGCCAATAAAAGTCACTTCATCTCAGGCGTCGGGAATTGGCATCTCAGAGCCCGTAAGTTTAAAGCAGGCACTTAGAGGGTTATGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAAAGACTCTCTAAGCCGTGCAGTTCATCTAGAGCATCAGAGGCTGGCACCATCAAAAGGTTGTACACAGCGGTGGTAGATGAGGGGAAAGCGAACTTGGTTGAAATTTCTCTAGTACCAGAGATATCTACTACACCTTCTAATAAATTGCCCTGTGTAACCACATCAAGTTCAAGTAATCATCATTGTAGTCCTTCGGTTGATGCAACAAAACCAAAAGAAATGATAATTGGGTTTTCATCCCAAGATCAGATTGTTCCTCTGCCATTTGAGGTTGAGGGTGAGAAACCAATCATGGAGATTGGAAAACCAATACTTGCAAATTTGTCACCAGTTGCCTCTGCAAGTGAAGTAGTGCCAGAGGTTAGAAGGGGTCCTGCTTCCTCGAGCATCACTTCTCTTGGTTCTTCAATGCCAGTTAAGGGACAGGAAGCAAATGCATGTTGTCCACCTAGCTCTAGCATTGCTAATGGAGGGGATAAAATCACAAGCAGTAATACATGTTTGTCAAAGCCAATATTTAATAACTTGAATTTCCTTAAGAAAAAAGTAAAGCAAGATTTAAGTTCTGCCTCAAGCTGCTCCACTCCATGTACAAGAAATTTGGACAAGGAGGTTGGGAATTCTGATTTGAAGCACGACGTGAAAGAAAATGAAAAATTGTCTCCTAGCATTGAAGTTAACTCAATTAGTGTTGGTACGGATTCAAGCAAACCTGGTTTCAGCTTGAATTGCAATAAGAGAACTAAGTTTCTGGTGACAAAGGTTGACGAGAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCTCAAAGTTCAAAAAGTAGCATTGGTGAATATAGTAGTAGCACAAGCATCAGTGAGGAAAGCAGCCTAAGTGGTTCCAGCCGCGGTGGCCACAGACCTCACATGTCTAAACACATGAGATGGGAAGCTATTCGAGCTGTGCAGCAGCAACAGGGTAATTTAAATTTGAAGCATTTTAAGCTGCTAAAGAGGCTTGGTAGCGGAGACATTGGAACTGTTTATCTTGCGGAACTAATTGGTACAAGCTGCCTTTTTGCACTCAAAGTGATGGACAATGAATTTTTGGCAAGTCGGAAGAAAATGTTCAGGGCCCAAACTGAAAGAGAGATCCTTCAAATGCTAGATCATCCATTTCTTCCTACATTGTATTGCCATATTGCAACAGATAAGCTCTCTTGCTTGGTCATGGAGTATTGTCCAGGAGGAGATCTGCATGTGCTGCGGCAGAGACAGTCATACAAGAGTTTCTCAGAACAAACAACCAGGTTTTATGTTGCTGAGGTTCTTCTCGCCCTGGAATATTTGCACATGCTGGGAGTTGTATATCGAGACCTAAAGCCGGAAAATATCCTAGTACGAGAAGATGGACACATTATGCTGACAGATTTTGACTTGTCACTCAGGTGTTCTGTTAATCCAATGTTAGTCAAGTCATCTTCACCTGACACGGATGCCACGAAGAAGACCTCCAGTCCCTGTTCTGAGGCTAGCTGCATACACCCTTTCTGTCTCCAACCAGATTGGCAAGTTTCCTGCTTTACTCCCATTCTATTATCTGCTGGAGCAAAATCTCGAAAGGTGAAGTCTGACATAACTTCTCAGGTTGGTCCACTGCCACAGCTTGTGGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACTTATGAATATCTTGCTCCGGAGATCATCAAGGGTGACGGTCATGGGAGTGCAGTAGATTGGTGGACTTTTGGTATACTTCTGTTTGAGCTTTTATATGGTAAGACTCCCTTCAAGGGCCAATCAAATGAAGACACATTAGCCAATGTTGTGTCACAAAGCCTTAAGTTCCCAGGTGCTCCAATAGTCAGTTTTCATGCCAGAGATTTGATCAGAGGGTTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCTGCAAAAGGTGCTGCTGAAATAAAGCAGCACCCCTTCTTTGAAGGCCTCAACTGGGCTCTAATACGGTGTGCAGCACCACCAGAGCTCCCCAAGTTTCGGGATTTTGGAAGCAGTGCTCCATCTATGGGTGCAAATAAGGAGAATGCAAATGATTTAGAGGATATAGAAGATTGTGAAGAGTTTGAGCTGGGCAAGGCTGGTTTTCTTATGTTGTGGTGGGCGTTTCCTTGGTTTAAAGCACAGATCGGAGATTCTGATGTGAATACTGATGATAGAGCACAGCTGGAGTTGGAATGTTCTGTGCAAGTCATGAGCTGCCAAAAGGCAGAAAATGTATTTTATTACTTCCTGAATGGAGCATCACCTAATGTTGTTTTGCTTCCTGCCTTCTCTTGTAATGTATTGAATCTTTGGTACCTACCTTATTATGCGATTCATTCGTGCCTGGTTTTAGATGAACTTGCAGATTCCAGAGGATCATTGTTGAAAAATATTTAG	2775	0.4245	MDSYGNTCEIVESREELISDFKTVDKPESSCAHKSGKKYSIEDDINQLFQAIDVKSSSRGRNSSRLQKSALKRPIKVTSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRASEAGTIKRLYTAVVDEGKANLVEISLVPEISTTPSNKLPCVTTSSSSNHHCSPSVDATKPKEMIIGFSSQDQIVPLPFEVEGEKPIMEIGKPILANLSPVASASEVVPEVRRGPASSSITSLGSSMPVKGQEANACCPPSSSIANGGDKITSSNTCLSKPIFNNLNFLKKKVKQDLSSASSCSTPCTRNLDKEVGNSDLKHDVKENEKLSPSIEVNSISVGTDSSKPGFSLNCNKRTKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESSLSGSSRGGHRPHMSKHMRWEAIRAVQQQQGNLNLKHFKLLKRLGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKMFRAQTEREILQMLDHPFLPTLYCHIATDKLSCLVMEYCPGGDLHVLRQRQSYKSFSEQTTRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKTSSPCSEASCIHPFCLQPDWQVSCFTPILLSAGAKSRKVKSDITSQVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGDGHGSAVDWWTFGILLFELLYGKTPFKGQSNEDTLANVVSQSLKFPGAPIVSFHARDLIRGLLIKDPENRLGSAKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGSSAPSMGANKENANDLEDIEDCEEFELGKAGFLMLWWAFPWFKAQIGDSDVNTDDRAQLELECSVQVMSCQKAENVFYYFLNGASPNVVLLPAFSCNVLNLWYLPYYAIHSCLVLDELADSRGSLLKNI	924

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g01889	924	CDD	STKc_phototropin_like	436	795	-	-
	Spst5g01889	924	Gene3D	Phosphorylase Kinase; domain 1	436	520	-	-
	Spst5g01889	924	MobiDBLite	consensus disorder prediction	380	408	-	-
	Spst5g01889	924	FunFam	serine/threonine-protein kinase D6PK-like	667	790	-	-
	Spst5g01889	924	Pfam	Protein kinase domain	439	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g01889	924	Pfam	Protein kinase domain	669	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g01889	924	ProSiteProfiles	Protein kinase domain profile.	438	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g01889	924	Gene3D	Transferase(Phosphotransferase) domain 1	666	781	-	-
	Spst5g01889	924	SUPERFAMILY	Protein kinase-like (PK-like)	412	790	IPR011009	-
	Spst5g01889	924	FunFam	serine/threonine-protein kinase D6PK-like	522	589	-	-
	Spst5g01889	924	Gene3D	Transferase(Phosphotransferase) domain 1	521	586	-	-
	Spst5g01889	924	SMART	serkin_6	438	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst5g01889	924	PANTHER	FLIPPASE KINASE 1-RELATED	321	791	-	-
	Spst5g01889	924	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	559	571	IPR008271	GO:0004672\|GO:0006468
	Spst5g01889	924	FunFam	Serine/threonine-protein kinase D6PK-like	436	521	-	-
	Spst5g01889	924	MobiDBLite	consensus disorder prediction	373	416	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g01889	Spst-Chr5	54597246	54601835	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst5g01889	363	822	AGC Kinase Gene Family	AT3G52890	66.454	0.0	636

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Spst5g01889		Pkinase	2.9e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g01889	-		-	gmx:100784955	1387.47