Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01874 ATGGCAATGGAGTCTGGTCCTCCCGCGAACGATCTGTGTTCAGTGTGCCATGGCAACTTTCACATTCCCTGTCAAGCCAATTGTTCTCACTGGTTTTGCGGAAATTGCATCATGCTAGTGTGGCAGCACGGATCAGGGACTAGCTCTTGCAAGTGCCCTCTCTGTCGCCGACCCATCACTCTCTTAGTCCCCTCCGAAGACTCTCTCAGGCACCGCCATGACCCTCAAGTTGCTCAGATTCTCTCCAAGATTCATGCTTATAACCGTGTCTTTGGTGGCCAACCCACCTCTTTTTTTCAGAGAGTGCAAGATCTTCCTTTTCTGTTGCACAGGCTGCTGCGGGAGTTCCTCGACCCTCACAGATCTCTTCCTCTCGTCATCCGTGCCCGTGTCTTTGTTGCTATGATAGTAAGTGTTATATACATCCTCAGCCCAATTGATATCATACCAGAAGGAATATTAGGAATAGTTGGTCTCTTAGATGATGTCTTAATTGGGCTCGTCTGCTTCCTACATGTTGCTGCCCTTTATAGATCAGTACTTTACCTCCGTCATGGGGGTTTCTGA 567 0.4868 MAMESGPPANDLCSVCHGNFHIPCQANCSHWFCGNCIMLVWQHGSGTSSCKCPLCRRPITLLVPSEDSLRHRHDPQVAQILSKIHAYNRVFGGQPTSFFQRVQDLPFLLHRLLREFLDPHRSLPLVIRARVFVAMIVSVIYILSPIDIIPEGILGIVGLLDDVLIGLVCFLHVAALYRSVLYLRHGGF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01874 188 SUPERFAMILY RING/U-box 11 62 - -
Spst5g01874 188 Pfam Protein of unknown function (DUF1232) 133 165 IPR010652 -
Spst5g01874 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 92 IPR013083 -
Spst5g01874 188 ProSiteProfiles Zinc finger RING-type profile. 13 56 IPR001841 -
Spst5g01874 188 SMART ring_2 13 55 IPR001841 -
Spst5g01874 188 CDD RING-HC_RNF113A_B 7 64 - -
Spst5g01874 188 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Spst5g01874 188 PANTHER UNCHARACTERIZED 4 185 IPR038896 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01874 38 187 C3H Transcription Factor Family AT1G72175 69.333 2.25e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01874 K15707 - gmx:100306204 322.783