Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01869 ATGATAGAGAGGATAGGCATAGGCGCAGGTCTCGGTCTAGATCTCAATCCCCATCAGCGGGTAAATCTGAACATAGATCAAGGTCGCGTTCTCGTTCACGCTCAAAGAGGCCAGATCACTGGTGCAAATCCCACAATTCCTGGAATGTTTCCAAATATGTTTCCATTGGCTACTAGCCAGTTGCAGCCGTTTAGTGCTCTCCCAGTCATGCCAGTTCAGGCCATGACACAGCAGGCTACACGACATGCTAGGCGGGTGTATGTTGGAGGCCTTCCTCCTACTGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAAGTTATGGCTAAGATTGGGGGAAATACTGCTGGCCCAGGTGATGCTGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCTTTTGTGGAGATGAGGTCGGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGGATTATTTTCGAGGGGGCACCTGTTAAGGTTAGGAGACCGACTGATTATAATCCTTCCTTAGCTGCTACCCTAGGTCCAAGCCAGCCTAACCCAAACCTTAATCTGGCTGCTGTTGGCTTAACACCTGGGTCTGCTGGTGGACTCGATGGTCCAGATCGGATTTTTGTTGGTGGACTTCCTTACTACTTCACAGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTAAGAGGTTTTGATCTAGTGAAAGATAGAGAAACGGGTAACTCAAAGGGATATGCATTTTGTGTCTACCAGGATCTTGCAGTTACTGATATTGCATGTGCTGCTCTAAATGGAATAAAAATGGGAGATAAGACTCTCACGGTTAGACGAGCTAATCAAGGTGCAAATCCACAGCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCACTACAGAAACTTATGTTGCAGCCAGCCTTAGTGGCAACAAAGGTGGTATGCTTAACTCATGCAGTTTCTGCTGACGAGCTCAAAGACGATGAAGACTATGAAGAGATTCTTGAAGATATGAGACAGGAGTGTTCCAAATTTGGTTCTTTGGTGAATGTGGTGATCCCGCGTCCACCACCTGACGGTGAACCTGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGACGTGGATGGTGCTACAAAAGCTCGTGCTGGATTGAATGGACGGAAATTTGATGGGAACCAAGTAGTAGCTGTTTTCTATCCAGAAAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1263 0.4592 MIERIGIGAGLGLDLNPHQRVNLNIDQGRVLVHAQRGQITGANPTIPGMFPNMFPLATSQLQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILEDMRQECSKFGSLVNVVIPRPPPDGEPAPGVGKVFLEYVDVDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01869 420 Gene3D - 79 180 IPR012677 -
Spst5g01869 420 SMART rrm1_1 205 278 IPR000504 GO:0003723
Spst5g01869 420 SMART rrm1_1 326 407 IPR000504 GO:0003723
Spst5g01869 420 SMART rrm1_1 85 163 IPR000504 GO:0003723
Spst5g01869 420 FunFam U2 snRNP auxiliary factor large subunit 79 180 - -
Spst5g01869 420 Gene3D - 195 296 IPR012677 -
Spst5g01869 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 411 IPR000504 GO:0003723
Spst5g01869 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 403 IPR000504 GO:0003723
Spst5g01869 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 275 IPR000504 GO:0003723
Spst5g01869 420 CDD RRM2_U2AF65 204 280 - -
Spst5g01869 420 SUPERFAMILY RNA-binding domain, RBD 68 170 IPR035979 GO:0003676
Spst5g01869 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 167 IPR000504 GO:0003723
Spst5g01869 420 FunFam U2 snRNP auxiliary factor large subunit 314 419 - -
Spst5g01869 420 PANTHER RNA-BINDING PROTEIN 13 418 - -
Spst5g01869 420 CDD RRM3_U2AF65 318 406 - -
Spst5g01869 420 Gene3D - 314 419 IPR012677 -
Spst5g01869 420 FunFam U2 snRNP auxiliary factor large subunit 181 296 - -
Spst5g01869 420 SUPERFAMILY RNA-binding domain, RBD 202 289 IPR035979 GO:0003676
Spst5g01869 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Spst5g01869 420 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 38 418 IPR006529 GO:0003723|GO:0005634|GO:0006397
Spst5g01869 420 CDD RRM1_U2AF65 83 165 - -
Spst5g01869 420 SUPERFAMILY RNA-binding domain, RBD 315 413 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01869 Spst-Chr5 54429358 54433031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01869 206 396 Eukaryotic Initiation Factors Gene Family AT1G22760 23.711 7.89e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01869 K12837 - gmx:100793801 749.584