Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01863 ATGGAAAGGAAGATGAAGGTTCGTTCTGATAGGGAAAAGACGAAAGTGGTGATTAGGCATTTGCCCCCTTCTCTCACTCAGTCTGATCTCTTCCAACACATCGATTCACACTTCGCTTCGCGTTACAATTGGTTCTCTTTCAGACCCGGCAACACCAGTCACAAGCGACAGAAACATTCCAGAGCGTATATAGACTTCAACTGTCCTCATGATGTTTTCGAGTTCGCTGAGTTCTTTGATGGACATGTTTTTGTTAATGAGAGAGGTGCCCAGCATAGAGCGATTGTTGAGTACGCCCCTTCCCAGCGTGCTCCGAAGCCAAGTACCAAGAAGGATGGACGTGAAGGGACCATATACAAAGATCCTGACTATCTGGAGTTCCTCAAACTCATTGCAAAGCCACATGAGCATCTTCCCAGTGCAGAGATACAATTGGAAAGAAAAGAAGCTGAACAAGGTGATTCTGAAGACAAATTTCAGTACCATTGTTCTCATGCTATATCCTCCTTTCCAGGGGCTAACAAGGAAACACCTATTGTCACACCCTTGATGGAATATGTTCGTCAGAAACGCTCTGTTGATACTGGTATGCAGGTTCTCCAGGCTTCGTCAGCAGTGGCAAAAGTTAGCAGAAGATCCAGAGCTGCTTTGCCTGGCAAGCCTGGCTCAGGCACTAAACGAGGATCTGAAAAGAAAAAGTATGTTCAGAAGGACAATGCCAAGAGTGCTGCTCGTAGAGAGTCAAAGGACAAGTCAGCCTTTATTGTCGTCCCCCAGCGAGAGGATCTATCAGCTGAATCGAGTATGAAAGGAATTTCTGAATTTGAAGCATTGCATGGCATTGAAGGTTCTATTTCTGGAATTCCGCTGTCTTCTGACTCGGGAAAGAAAAAAATCCTTCTTCTGAAAGGGAAGCATCGGGAAATTCCCAGTGCCACTGAGGGTACAGGAAAACAGCAAAACATACAGTCTGGAAATTCTCCTATTTCAACTTCTGTGAAACAGAACCATAGACGTGAAACTAGTGGAAGATTGATTAGGAGCATACTTTTGAATAATGAAGCTCGTCAAAGTCAGTCTATGCAACACAAAATTCAAATTTTAAGCTCAGAGAATGGGAAGCGACCATCTCGTTCATTTGGCTCAAGGTCTGGGTTAAATGATCAACTTTCAAATCATGACGCTGCACAAGTTAATTCTGAAGGGGATTCTAAAAGGGCTTTGGATGAAAAGTTCGTGAGAAGGGATCCGCATGGTTTGGGTAGTGGTGAGAAAACAGAAAAACGAACTAGAAACAAGGACAGACCTGATCGTGGTGTTTGGACACCCCTTCGACGTTCTGATGTTTCACATGCTGGTAATGACCACTCATCATCCTCAATGGCACAACCTACACTGTCAAATCTTGAATCAACTGAAGGAGAATTGAAAGAAAATGTTACTTCTGGAAACAGGGGCAGTGAATTCTCTGCTTCTGCAGGTGGACGAGGCAATCCTTCTATTGAGAATGGTTCTCAAAGAAATTTTGCACGTCGTGGAGCTTCCTATGTAGTGAAGGATGACGGTGCAGTCAGTATAAGTGAAGGGAAACCTTCCAAGAAAAATGTTGGGCATAGTGCTTATGAGGTATACATGTCATATGCTGATGTATTTTTTATTGTCTGTTTGGCTGATTCATCGTGTGTAAAATTTCCTTACCATCATATTATGTATACTCAGTCAGGGTATCATTCCTGCAATGTTGAGCTACGGTCTCTGCTTAGGACATCATCCACAACTAATTCAGGTCAACCTGATTCTAAGCGACTTGAAAGGTGTTTGCCTGACGGAGCCTGCACAATAAAGGGAATGCGAAGTTACAGACCTCTGTTGGGAAATGTTTGTGTTTGGGATGTAACTGTAAAGTTCTTGGTACATAACATGGGACGGTATGCTGGAAAGAGTGAAAAATCTTGTCCCGTTCAAGGGACAAGTAAATCCCTCATTCCGATGCAGCCTCGGCGGAGAAAGGATGATGGAACCTCCGCGGAGAGGGACTCTAAGCATTTTCTGAAGATCATACTTCCCTCTGCCATTCATGCTAACCAAATGTCTAAAAGTGTCAAAGCCACTCTAATTGGCATTGCACGTGACCTGGGGAGCAAGTTGTTCTTTGGTGCTTCTTTTCTTTACTTAATTGCAAGAATTCCCGAGGAATTTATAAAAAGATTTGGAGATGAACTATCAACTGTTGCTACGATTACTGTCCCCGATGGTCGTGTTTGGAGAATGAGGTTGAAGAAGTGTGGTAAAGATGTTTTCTTCCGCAGCAAATGGCGAGAGTTTGTAAAATACTATTCTCTTGGTTATGGTTCACACCTAATTTTCAGATATGTGGGGAATTCAAAATTTCGTGTTCTTATATTTGATATTACTTCTGCTGAGATTTGTTATCCTCGCAAAACTCGGGGTAATAATGAAGAAACAAACTCGGAGAATTGGAAGAGGTCCAAGTTTGATGATCAGCACCACAGCTATCAAACGAAAAAGAAAGAACTTAAGGAGGAGAATGTGGTAGAATCTAGTGATGAAGATGAAGTGAATTTAATACGACTGAGTAAAGGAAGGAAGAAAGAAAGTGATTTTTCTCATGGGAAACAAGTCAAAAGAGGATGCAGTGAAAACCACTCTCCTTGGGAGATAGCAAAGTTTGCTGCCACTGCTACTACTAGTGCTACTGCCAGTGATAGATTAAAGCCAAAAAATCCTTTTGTTACTTGTGTAATCAAGTCTGATCGATTGCTGGCCTTCCTTGTGCAGTACGTGTCAAGTGAATTTGCTGGCAAGTATCTGAAGCCATGTGTTGGTATGATGCTCCAAAATAGTAATGGAGAGGCGTGGGATGTTTCTTGCGTACATCATAATGGTAGCAGAGCAATGATAATATGTAGGGGATGGACTAAATTTATGAGGGACAACGATCTATCAGTAGGAGATCTTTGTGTGTTGGAGTTGATCAAGAGGGACCCCGTTGTGCTAAAACTTACTTTGCGTGGTGAAGCTCAATAA 3048 0.4255 MERKMKVRSDREKTKVVIRHLPPSLTQSDLFQHIDSHFASRYNWFSFRPGNTSHKRQKHSRAYIDFNCPHDVFEFAEFFDGHVFVNERGAQHRAIVEYAPSQRAPKPSTKKDGREGTIYKDPDYLEFLKLIAKPHEHLPSAEIQLERKEAEQGDSEDKFQYHCSHAISSFPGANKETPIVTPLMEYVRQKRSVDTGMQVLQASSAVAKVSRRSRAALPGKPGSGTKRGSEKKKYVQKDNAKSAARRESKDKSAFIVVPQREDLSAESSMKGISEFEALHGIEGSISGIPLSSDSGKKKILLLKGKHREIPSATEGTGKQQNIQSGNSPISTSVKQNHRRETSGRLIRSILLNNEARQSQSMQHKIQILSSENGKRPSRSFGSRSGLNDQLSNHDAAQVNSEGDSKRALDEKFVRRDPHGLGSGEKTEKRTRNKDRPDRGVWTPLRRSDVSHAGNDHSSSSMAQPTLSNLESTEGELKENVTSGNRGSEFSASAGGRGNPSIENGSQRNFARRGASYVVKDDGAVSISEGKPSKKNVGHSAYEVYMSYADVFFIVCLADSSCVKFPYHHIMYTQSGYHSCNVELRSLLRTSSTTNSGQPDSKRLERCLPDGACTIKGMRSYRPLLGNVCVWDVTVKFLVHNMGRYAGKSEKSCPVQGTSKSLIPMQPRRRKDDGTSAERDSKHFLKIILPSAIHANQMSKSVKATLIGIARDLGSKLFFGASFLYLIARIPEEFIKRFGDELSTVATITVPDGRVWRMRLKKCGKDVFFRSKWREFVKYYSLGYGSHLIFRYVGNSKFRVLIFDITSAEICYPRKTRGNNEETNSENWKRSKFDDQHHSYQTKKKELKEENVVESSDEDEVNLIRLSKGRKKESDFSHGKQVKRGCSENHSPWEIAKFAATATTSATASDRLKPKNPFVTCVIKSDRLLAFLVQYVSSEFAGKYLKPCVGMMLQNSNGEAWDVSCVHHNGSRAMIICRGWTKFMRDNDLSVGDLCVLELIKRDPVVLKLTLRGEAQ 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01863 1015 CDD B3_DNA 921 1002 IPR003340 GO:0003677
Spst5g01863 1015 Gene3D - 898 1011 IPR015300 -
Spst5g01863 1015 FunFam - 5 103 - -
Spst5g01863 1015 MobiDBLite consensus disorder prediction 225 253 - -
Spst5g01863 1015 Pfam B3 DNA binding domain 932 1005 IPR003340 GO:0003677
Spst5g01863 1015 Pfam B3 DNA binding domain 728 803 IPR003340 GO:0003677
Spst5g01863 1015 MobiDBLite consensus disorder prediction 814 850 - -
Spst5g01863 1015 ProSiteProfiles B3 DNA-binding domain profile. 729 805 IPR003340 GO:0003677
Spst5g01863 1015 CDD B3_DNA 728 803 IPR003340 GO:0003677
Spst5g01863 1015 MobiDBLite consensus disorder prediction 654 678 - -
Spst5g01863 1015 SUPERFAMILY DNA-binding pseudobarrel domain 913 1001 IPR015300 -
Spst5g01863 1015 SUPERFAMILY DNA-binding pseudobarrel domain 721 804 IPR015300 -
Spst5g01863 1015 MobiDBLite consensus disorder prediction 453 508 - -
Spst5g01863 1015 Pfam Smg-4/UPF3 family 12 191 IPR005120 -
Spst5g01863 1015 MobiDBLite consensus disorder prediction 313 336 - -
Spst5g01863 1015 Gene3D - 5 103 IPR012677 -
Spst5g01863 1015 ProSiteProfiles B3 DNA-binding domain profile. 950 1014 IPR003340 GO:0003677
Spst5g01863 1015 MobiDBLite consensus disorder prediction 354 508 - -
Spst5g01863 1015 Coils Coil 829 849 - -
Spst5g01863 1015 CDD RRM_like_Smg4_UPF3 15 100 - -
Spst5g01863 1015 MobiDBLite consensus disorder prediction 399 452 - -
Spst5g01863 1015 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 5 541 IPR039722 GO:0000184
Spst5g01863 1015 MobiDBLite consensus disorder prediction 354 398 - -
Spst5g01863 1015 Gene3D - 674 806 IPR015300 -
Spst5g01863 1015 SMART B3_2 717 805 IPR003340 GO:0003677
Spst5g01863 1015 SMART B3_2 917 1014 IPR003340 GO:0003677
Spst5g01863 1015 MobiDBLite consensus disorder prediction 664 678 - -
Spst5g01863 1015 MobiDBLite consensus disorder prediction 310 341 - -
Spst5g01863 1015 MobiDBLite consensus disorder prediction 210 253 - -
Spst5g01863 1015 SUPERFAMILY RNA-binding domain, RBD 14 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01863 Spst-Chr5 54341350 54355255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01863 708 1009 B3 DNA Binding Superfamily AT3G18990 29.118 7.51e-37 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst5g01863 Smg4_UPF3 7.1e-50 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01863 K14328 - gmx:100801152 845.114