Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01854 ATGGATGATGCCGGACACTTTGCTCGGTGTTCTGTCACTGACAAAGCAATGAGCAAACAGCAACGGAGTTTCACGGCGGCGAAGAATGGTCCTTCTACGGCGACCACCGGCCAAATAAAAAGACGGTGGCAAATTCCGACCAACATACTGTCTCTGGAACCTGACATCGTGTGCACCATCTTCGCTTTCCTCGACATGTTTGACCTCATTCGCTGCTCCCTCGTTTGCAAACTCTGGAATGCCATCATCGAGTCCCGGTCGCTGCGAGAGTTTTGTGAGAGGAACATGAAGAATTATTGGTCTGAATTTACGGAAAAGCCCTTGAGGGTGATTTTAGGGGAGGTGGCTGTGGAGCGGCATAGATTGGCTCTTCAGTGTGGTGGCTTTTACGTTAATCAATGGAAGGGCCATTCAACTACGGTTGCTCAGTGCCGAATGAAAATGGGCATGCTTGTTACTGGTGTGGGTGATAAGGTTATTCGTCTCTGGTCATTAGACAATTTCAAATGCATAGAAGAACACTCAGTGCCTGATGCCTTCCCTTTAGTTGACTTTGATTTTGATGAGAGCAAGGTTGTTGGTCTAATTGGTAGTCATTTATGCATATGGAGGCGGAATGGGAAAAGAAGCATATTTCCTTCGCTTGAAGGCAAATTTATAAAAGGTTCATGCATGCGTTACTTTGACCCAGAAGCTATGGTTGGATGTGATGATGGAGCTGTTCGTGTTTTTGACATGTACAGTAAGAAATGTTCTCAAATAATAAGAATGCACCATGTACCGATAACATGTTTATGTTTGGGTGAAGATCAATTGATAGTGAGTGGCTCCACTTCAGGGAGTATAACAATATCAGATCCTTCCTCTGTTCAGCTGGTAGCAACACTTAGGTCAAGTGATGCCAGAGGCATAAGGACCATGTGTTTCAATCCCTCCTCTCAGCTATTGTTCGCAGGATCAGCTGTTGGATATACATATTGTTGGGACCTTAGAACAAGGAAACTGTTGTGGAGCAACCGAGTGAGTCCTAATGTTATATACTCCTTACAGCACATGCAGAGTGACCCATCAACATTAGCTGTTGGTGGAATAGATGGTATTCTAAGATTGCTAAATCAGAACAATGGCAGTACTGTTTCGTGTTGCATTATGGAGGATAAAGTGTTACCAACATCTCAAAGTTCTTCTGGGTTCATTCAAAGAAGAAAAGGGAAGAGGTTGCCCCAAGATACCTACATAAACATTGATCTCATTCCTAAGACTGTTCGACCTTCTATTACATGCCTCGCTGTTGGAATGAAGAAGATTGTTACCACACACAATACAAATGATATCAGATTATGGAAATTCAAAAGCAACATTTCTTTGTAA 1371 0.4318 MDDAGHFARCSVTDKAMSKQQRSFTAAKNGPSTATTGQIKRRWQIPTNILSLEPDIVCTIFAFLDMFDLIRCSLVCKLWNAIIESRSLREFCERNMKNYWSEFTEKPLRVILGEVAVERHRLALQCGGFYVNQWKGHSTTVAQCRMKMGMLVTGVGDKVIRLWSLDNFKCIEEHSVPDAFPLVDFDFDESKVVGLIGSHLCIWRRNGKRSIFPSLEGKFIKGSCMRYFDPEAMVGCDDGAVRVFDMYSKKCSQIIRMHHVPITCLCLGEDQLIVSGSTSGSITISDPSSVQLVATLRSSDARGIRTMCFNPSSQLLFAGSAVGYTYCWDLRTRKLLWSNRVSPNVIYSLQHMQSDPSTLAVGGIDGILRLLNQNNGSTVSCCIMEDKVLPTSQSSSGFIQRRKGKRLPQDTYINIDLIPKTVRPSITCLAVGMKKIVTTHNTNDIRLWKFKSNISL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01854 456 SMART WD40_4 416 449 IPR001680 GO:0005515
Spst5g01854 456 SMART WD40_4 332 372 IPR001680 GO:0005515
Spst5g01854 456 SMART WD40_4 127 164 IPR001680 GO:0005515
Spst5g01854 456 SMART WD40_4 289 329 IPR001680 GO:0005515
Spst5g01854 456 SMART WD40_4 248 286 IPR001680 GO:0005515
Spst5g01854 456 SUPERFAMILY WD40 repeat-like 128 452 IPR036322 GO:0005515
Spst5g01854 456 CDD F-box_SF 50 84 - -
Spst5g01854 456 Gene3D - 45 90 - -
Spst5g01854 456 ProSiteProfiles F-box domain profile. 46 103 IPR001810 GO:0005515
Spst5g01854 456 PANTHER F-BOX/WD REPEAT-CONTAINING PROTEIN 2 50 378 IPR042627 -
Spst5g01854 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 134 173 IPR001680 GO:0005515
Spst5g01854 456 Gene3D - 124 228 IPR015943 GO:0005515
Spst5g01854 456 Gene3D - 229 456 IPR015943 GO:0005515
Spst5g01854 456 Pfam F-box-like 54 86 IPR001810 GO:0005515
Spst5g01854 456 SUPERFAMILY F-box domain 46 102 IPR036047 GO:0005515
Spst5g01854 456 SMART fbox_2 52 92 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01854 128 338 Miscellaneous Gene Families AT5G08390 24.664 6.02e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01854 - - gmx:100799536 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01854 5 54223505 54243733 Spst5g01854 5 54223505 54243733 ECH
Spst5g01854 5 54223505 54243733 Spst11g00171 11 7047307 7049939 PCT