Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01843 ATGGGACCCGCAGGAGGTGCAGAGGAAAATCCAAAATGGGGCAAAAAGGAAACAGTCTCTAAATGCACAGAGAACAACACGGAGCCATGCAAAGTTGCCGTTTCCATCCAGGCCAACCTCTCTGCTCAGTCGTTTGAGGGTATCTCATTTCAAACCTCAAACTCTGCCTCCTCTAATCCCTTCTTGAGTTGGGCATGTCCAATGGGTCGAGGGAAGATCGAGATCAAAAGAATCGACAATGCCAGCAGCAGGCAAGTCACCTTCTCCAAGCGCCGAACAGGCTTGTTCAAGAAGGCTCAGGAACTCTCCATTCTATGTGACTCTGAGGTTGCCGTCATAGTCTTTTCCAACACTGGCAAGCTCTTCGAGTTTTCCAGTTCTGGTATGACGCGAACACTTTCAAGATACAATAAATGCCTTGGTCCTACAGATGCTGCTTCTGTAGCAGAAATTAAGACACAGAAGGAAGATTCTAAAATGGTGGAGATCCTACGAGATGAAATTGCAAAGATAGAAACAAAGCAATTACAGTTATTGGGTAAGGATCTGACAGGATTGGGTATAAAGGAATTGCAAATTTTAGAGCAGCAACTTAGTGAGGGGTTATTGTCTGTCAAGGCAAGAAAGAGCAATGTTCAACCCTTAACATTTGATCTTTCAGGAGGAACTACTCATGGAGCAACTGGAGCACTCCAGAATTCAGGTATATCGGAATCAGAAGTTGAGGAGCTTCGTTGTCTGTTCCCACAATCAGAAAACATGGTCCCATTTCAATATCAACACACTGAAAGAAATAACTGTTTTGTAAATACTGGTGCCAGATGTCTCAACTTGAGCCATAACTGTGGAAATGAGAAAGGAAGTTCAGACACAGTATTTCATTTGGGTGAGTAA 894 0.4374 MGPAGGAEENPKWGKKETVSKCTENNTEPCKVAVSIQANLSAQSFEGISFQTSNSASSNPFLSWACPMGRGKIEIKRIDNASSRQVTFSKRRTGLFKKAQELSILCDSEVAVIVFSNTGKLFEFSSSGMTRTLSRYNKCLGPTDAASVAEIKTQKEDSKMVEILRDEIAKIETKQLQLLGKDLTGLGIKELQILEQQLSEGLLSVKARKSNVQPLTFDLSGGTTHGATGALQNSGISESEVEELRCLFPQSENMVPFQYQHTERNNCFVNTGARCLNLSHNCGNEKGSSDTVFHLGE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01843 297 PRINTS MADS domain signature 70 90 IPR002100 GO:0003677|GO:0046983
Spst5g01843 297 PRINTS MADS domain signature 90 105 IPR002100 GO:0003677|GO:0046983
Spst5g01843 297 PRINTS MADS domain signature 105 126 IPR002100 GO:0003677|GO:0046983
Spst5g01843 297 PANTHER SERUM RESPONSE FACTOR HOMOLOG 70 229 - -
Spst5g01843 297 MobiDBLite consensus disorder prediction 1 20 - -
Spst5g01843 297 SMART madsneu2 68 127 IPR002100 GO:0003677|GO:0046983
Spst5g01843 297 ProSitePatterns MADS-box domain signature. 70 124 IPR002100 GO:0003677|GO:0046983
Spst5g01843 297 SUPERFAMILY SRF-like 69 145 IPR036879 GO:0003677|GO:0046983
Spst5g01843 297 CDD MADS_MEF2_like 69 139 IPR033896 GO:0000977|GO:0045944
Spst5g01843 297 ProSiteProfiles MADS-box domain profile. 68 128 IPR002100 GO:0003677|GO:0046983
Spst5g01843 297 Gene3D - 80 160 IPR036879 GO:0003677|GO:0046983
Spst5g01843 297 ProSiteProfiles K-box domain profile. 154 247 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst5g01843 297 Pfam K-box region 153 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst5g01843 297 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 77 124 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01843 Spst-Chr5 54153392 54159493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01843 68 296 MADS-box Gene Family AT5G13790 46.522 4.25e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst5g01843 K-box 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01843 - - gmx:547732 344.739